Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10895 230 3e-55 seq83140 109 7e-19 >seq10895 Length=16309 Score = 230 bits (254), Expect = 3e-55 Identities = 869/1356 (64%), Gaps = 27/1356 (2%) Strand=Plus/Minus Query 62909 ATCAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGC 62968 ||||||| || || | ||||||||| | || | ||| |||| ||||| || || Sbjct 11385 ATCAAATTTGCCCCCTTTAACAAACATGGGAAGAGCTATAGAGGCCAAGTTACAAACCGC 11326 Query 62969 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGT 63028 ||| |||| | | ||||| | |||||| || |||||||| | | |||||| Sbjct 11325 TACTTCATCGGGGGAGGTATATTCCAATATCTCGGTACAAAGATTGGAAGATCGGATAGT 11266 Query 63029 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 63088 || || || | ||||| || || || ||||||||||||||| || | || || Sbjct 11265 ACCCAAGTTCTTCTGATTGCTTTTACGATTGGCCGCATCCTTATAAAGCATATAGGGCGT 11206 Query 63089 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA----TTA 63144 || || |||||||| ||||| | || || ||| | | | ||||||| || Sbjct 11205 TCCCGTCTCAATCTGGGATTCCAATATTTTTTCCCATAAATCCCTGGCCTTTACCGTTTT 11146 Query 63145 TAGATTTGTATCTCCTTTCTC---TTTCGTATAGAGTATACAATCGTTCGAACTCGTCTC 63201 || |||| || ||| |||| ||| ||| | ||| || || || | Sbjct 11145 GCGACCCTTATCCTCTGCCTCATATTTCAAATATAGTTT-------TTCAAATTCCTCAC 11093 Query 63202 CCCAAACATTGTC--CAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 63259 | ||| ||||| |||||||||| || ||||| || | ||| ||| | | Sbjct 11092 TGTGAT--TTGAAAACAATCCTGGACATTCATTGGGGCACATTAAGGTCCAATCTTCATT 11035 Query 63260 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGT 63319 ||| ||| || ||||| || | ||| |||||||| | || || ||||| | | Sbjct 11034 GGCCTCCACGCGCTTCATGAACAAATCTGGAATCCACATGGCGTAGAACAGATCACGGGC 10975 Query 63320 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63379 | ||| || ||||| ||||| || | || | || | | |||||| | ||| Sbjct 10974 ACGCATTTCTTCCTTTCCGTGGTTCTTCTTCAATTCCAAAAAGTCAAAAATATCCGCATG 10915 Query 63380 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63439 ||| || || | || ||||| | | ||| || || ||||| ||||| | ||| Sbjct 10914 CCAAGGCTCTACATAAATGGCAAAACTTCCTTTTCGCTTCCCGCCTCCTTGATCAACGTA 10855 Query 63440 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63499 | || |||| |||| | || || | ||| || | |||||| || || |||||||||| Sbjct 10854 GCGTGCCGTGTCATTAAATACCCTTAGCATAGGGACAATACCATTGGAAGTACCATTGGT 10795 Query 63500 ACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGC 63559 ||||| ||||| ||| | || |||| ||| ||| || || || |||||||| || Sbjct 10794 ACCGGCTATATATGATCCCGTAGCCCGAACATTGTGAATGGAAAGTCCGATTCCCCCCGC 10735 Query 63560 CATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATC 63619 || |||||| ||| | || || ||||| || || || || || || || || Sbjct 10734 AGATTGGGAGATTTTCGCGGTCTGCTTCAAGGTGTCGTAAATACCATCGATACTGTCGTC 10675 Query 63620 GATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAA 63679 ||||| | ||| || ||| ||||| || | | ||||| | || || | Sbjct 10674 CTTCATGGCCAATAGGAAGCAGGAGGACATCTGCGGCTTGGGCGTTCCGGAGTTGAAGAG 10615 Query 63680 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63739 |||||| | || || || || |||||| || | || | || || || || || || Sbjct 10614 GGTAGGTGTTGCATGGGTGAAATATTTTTTTGACATCAGCTCATAGGTTTCTATGGCAGA 10555 Query 63740 GTCTATATCCCATTGA--TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63797 ||| |||| |||| | || ||||| || || || ||||| ||||| ||||| || | | Sbjct 10554 GTCCATAT--CATTTAAGTGGATTCCAACCGCAACGCGCATCAACATATGCTGGGGCCGT 10497 Query 63798 TCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63857 || | || || ||| | || | | |||||| ||||| || || || || || Sbjct 10496 TCGGCTATCTTCCCGTTCAGCTTAAGGAGATAGGATCGCTCCAAGGTCTTGAAGCCGAAG 10437 Query 63858 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTG 63917 || | |||| ||| || || | ||| || ||| ||||| || || ||| || || | Sbjct 10436 TAATCGTATCCAAAATCACGATTGTATATGATAGTCGAATCCAGTTTTTCCGAATTTTCG 10377 Query 63918 TTAACTATATCCATGGTAAT-ACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATT 63976 || || | || | | | |||| || ||| | | ||| || || | ||||| Sbjct 10376 GAAATTACCT-TATAGACCTCATCGGAAAGAAGCGGGGCTTTTTTACCCGTTCTGGGATT 10318 Query 63977 AACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAG 64036 | ||| | | | ||||||| ||| || ||| |||||| || | ||| |||| Sbjct 10317 TATATACTCGTACAAATCCTTCATGGTCTCGGAAAAGGATTTTTTGGTATTCTTATGTAA 10258 Query 64037 ATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT 64096 ||| || | || || | ||||| | | |||||||||||||| || || || Sbjct 10257 ATTGGAAACGGAAATACGAGCGGCCAATTTTGCATAATCCGGATGCGTAGTGGTCATGGT 10198 Query 64097 GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCC 64156 || || ||||| |||| | ||||||| || || || || |||| ||| | ||| Sbjct 10197 AGCAGCCTGCTCGGCGGCCAAATTGTCCAACTCCGAAGTGGTAACACCATCATAAAGTCC 10138 Query 64157 TTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCA 64216 | || ||| |||||| | ||| || || |||| | || ||| | |||||| || Sbjct 10137 CTCTATTACCCGCATAGCCACTTTTATGGGGTCTACCAGTTC---GTTGAGGCCATAACA 10081 Query 64217 CAATTTTCTAATACGAGACGTGATTTTATCAAACAT 64252 | |||||| | | | |||||| ||||| ||||| Sbjct 10080 TAGTTTTCTGACCCTTGCCGTGATCTTATCGAACAT 10045 Score = 208 bits (230), Expect = 1e-48 Identities = 585/890 (66%), Gaps = 21/890 (2%) Strand=Plus/Minus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||||||||| || || | |||||| || ||||| ||||| || | | ||| || | Sbjct 9831 TTTTTGGTACTCGGAGACCCTTTTTTCAAAGAAATTGGTTTTCCCCTGTAGTGAAATCAT 9772 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409 ||||| |||||||| ||||||||| ||| || | ||||| | || | |||| | Sbjct 9771 ATCCATAAAATCAAATGGATTGGTAGAATTATATACTTTTTCACATTGAAGTTCA---AC 9715 Query 33410 CAAT---CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 33466 |||| || || | || ||||| | |||| |||||| || ||||| || || Sbjct 9714 CAATAGCCTGTCCGTTACAAATTCCAAATATTGGGTCATCAGTTTTGCGTTCATCCCAAT 9655 Query 33467 GAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTAT 33526 ||| | || || || | | |||| ||| || |||| || | |||||||||| Sbjct 9654 GAGGCTTACAGGTAGGGATTCCGTAATAAACTCGCGTTCTATATCCAAGGCATTTGTTAG 9595 Query 33527 AATAAATCTAACGGTTTCTT----CACTCGGTGGATGTAATAAATGTT-TAAACATCAAA 33581 ||| | ||| | || | ||| || || | | ||| | | || || Sbjct 9594 AATCTGTGTAATCCTCTCCTTGGGCACCTTGTTGACCAAGTGGTGGTTGTGCAAATGAAC 9535 Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 ||| ||||||| |||| || || || | ||| ||||| || ||||| || | Sbjct 9534 G--GCGTAATCGCAATGCATGCCTTCATCACGGGAAATCAATTCATTGGAAAAAGTCAAC 9477 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||||| || | || || | |||||| |||||| || | ||||||||||| Sbjct 9476 CCGGGCATTAACCCTCTTTTCTTCAACCAAAAAATGGAACAAAAAGCCCCGGAAAAGAAA 9417 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC 33761 || ||||| || || |||||||| || | || || || ||| | | ||| ||| Sbjct 9416 ATCCCTTCCACAGCGGCAAAGGCGATCAATCGTTCGGCAAAACTTGGGGAATCA---ATC 9360 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 || | | |||||||| ||||| || || | || | | || || || | ||| Sbjct 9359 CATCTAAGCGCCCAATCCGCCTTTTTCTTGATGGCTGGAAAGTTCTCAATAGCCTGAAAA 9300 Query 33822 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33881 || ||||||||| || || || ||||| || || ||||| || || |||| Sbjct 9299 AGGATGTTTTTTTCCTTTTCGTCCTTTACATAGGTGTCTATCAACAGGGAGTAGGTTTCG 9240 Query 33882 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 33941 ||||| ||||| || || ||||| |||||||| || | | ||||| | | || Sbjct 9239 GAATGGATGTTCTCCATCATTATCTGGAATCCGTAAAAGAACTTGGCCTCCGAATATTGG 9180 Query 33942 ACTTCTGT-ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAA 34000 ||||| | ||||||| | | || ||||||||||| || || ||||| || ||||| Sbjct 9179 ACTTCGTTCACAAAATTCT-CGGCCAAATTTTCATTTACAATCCCATCGGATGCGGCAAA 9121 Query 34001 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA---TTCCAATC 34057 ||| ||||| | |||||||||||| || |||||| ||| |||| ||||| || Sbjct 9120 AAAGGCCAAGATATGTTTTATAAAGTAACGTTCGTCGTCACTTAATTTATCGTTCCAGTC 9061 Query 34058 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 34117 | | ||| | | || ||| | || || | |||||||| | ||||| ||||| Sbjct 9060 AGATAAATCCTGATGTAAATCAATCTCCTCGGCGGTCCAAAAACAGGCCTCACATTTTTT 9001 Query 34118 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 34167 ||| | ||| | || |||| || || ||||| || |||||||||| Sbjct 9000 GTACCATTCCCACAAATCGTGATGTTCAATGGGGAATATTACAAATCTAT 8951 >seq83140 Length=1468 Score = 109 bits (120), Expect = 7e-19 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | ||| |||||||||| ||| |||||||| |||||||||||| |||| || Sbjct 1225 AGGGCACTCGTTCGGGCACATCAACGTCCAGTCTCCGTCCTCCTTCACTCGTCTCATGAA 1284 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 || ||||||||||| ||| | | || ||||| || | ||| || ||||| || || Sbjct 1285 CAGGTCAGGAATCCAGAGACCGAAGAAGAGATCCCTCGCTCTGTGCTCCTCCTTGCCGTG 1344 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||| | ||| ||||| | | | || || ||||| || |||| ||| ||||| Sbjct 1345 GTTCTTCCGCAAATCCAGGAAGTCAAGGAGGTCTGAGTGCCAGGGCTCCAGGTAGATGGC 1404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628662750703200