Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq10895 196 4e-45 >seq10895 Length=16309 Score = 196 bits (216), Expect = 4e-45 Identities = 417/612 (68%), Gaps = 12/612 (2%) Strand=Plus/Minus Query 11637 AATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCA 11696 |||| ||||| | ||||| || | || | |||||| ||||| || || ||||||| Sbjct 9529 AATCGCAATGCATGCCTTCATCACGGGAAATCAATTCATTGGAAAAAGTCAACCCGGGCA 9470 Query 11697 TCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCT 11756 | || |||| ||| || | |||||| || | | ||| | || |||||||| || || | Sbjct 9469 TTAACCCTCTTTTCTTCAACCAAAAAATGGAACAAAAAGCCCCGGAAAAGAAAATCCCTT 9410 Query 11757 CCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATTTTC 11816 ||||||| ||||| || | | || ||| || | |||| | | |||||| | Sbjct 9409 CCACAGCGGCAAAGGCGATCAATCGTTCGGCAAAA--CTTGGGGAATCA-ATCCATCTAA 9353 Query 11817 TGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA-ATGC 11875 |||||||| || || || || | | | | | || ||||| | ||| | ||| Sbjct 9352 GCGCCCAATCCGCCTTTTTCTTGATGGCTGGAAAGTTCTCAATAGCCTGAAAAAGGATGT 9293 Query 11876 ATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGA 11935 ||||| || | | || ||||||| || ||||| || | || |||| ||||| Sbjct 9292 TTTTTTCCTTT-TCGTCCTTTACATAGGTGTCTATCAACAGGGAGTAGGTTTCGGAATGG 9234 Query 11936 ATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTG-CCTCTGAACACTGTACATC 11994 || || ||||| ||| || ||||| || ||| | | || |||| ||| | || || || Sbjct 9233 ATGTTCTCCATCATTATCTGGAATCCGTA-AAAGAACTTGGCCTCCGAATATTGGACTTC 9175 Query 11995 CA-CATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATG 12053 || ||||| | || || ||||| ||||||||||| ||||| | |||||||| | Sbjct 9174 GTTCACAAAAT-TCTCGGCCAAATTTTCATTTACAATCCCATCGGATGCGGCAAAAAAGG 9116 Query 12054 CTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATC---CCAATCATCTA 12110 | | ||||||||||||||||| |||||| | | |||||||||| ||| ||| || Sbjct 9115 CCAAGATATGTTTTATAAAGTAACGTTCGTCGTCACTTAATTTATCGTTCCAGTCAGATA 9056 Query 12111 AATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACA 12170 |||| | |||||| | || || |||||||||||| ||| | ||| ||| ||| Sbjct 9055 AATCCTGATGTAAATCAATCTCCTCGGCGGTCCAAAAACAGGCCTCACATTTTTTGTACC 8996 Query 12171 TTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCTAGAATCAGACTCTTGAA 12230 || ||| | ||| |||| | ||| ||||| || || || ||| | | || || | Sbjct 8995 ATTCCCACAAATCGTGATGTTCAATGGGGAATATTACAAATCTATCCTTATTTTCCTGCA 8936 Query 12231 GAATAGGCTCCA 12242 ||||||||||| Sbjct 8935 AAATAGGCTCCA 8924 Score = 161 bits (178), Expect = 9e-35 Identities = 599/933 (64%), Gaps = 12/933 (1%) Strand=Plus/Minus Query 37708 TTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTC 37767 ||||| || || |||||||| | || ||| | ||||| ||||| ||||| Sbjct 11336 TTACAAACCGCTACTTCATCGGGGGAGGTATATTCCAATATCTCGGTACAAAGATTGGAA 11277 Query 37768 GATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGT 37827 |||| || || ||||| || | |||||| ||| ||| | ||| ||||| || Sbjct 11276 GATCGGATAGTACCCAAGTTCTTCTGATTGCTTTTACGATTGGCCGCATCCTTATAAAGC 11217 Query 37828 ATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCT 37887 ||||| |||||||| || || || | || | || || ||||||| || || Sbjct 11216 ATATAGGGCGTTCCCGTCTCAATCTGGGATTCCAATATTTTTTCCCATAAATCCCTGGCC 11157 Query 37888 TTAACGATCGCTTT---AAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAA 37944 || || || ||| | || | || || || |||| | ||||| ||| | ||| Sbjct 11156 TTTAC---CGTTTTGCGACCCTTATCCTCTGCCTCATATTTCAAATATAGTTTTTCAAAT 11100 Query 37945 TCATTCCCCCATACATCGCATA--ATCCTGGACATTCGCATGGACACATTAGAGACCATT 38002 || | | | | | | | | ||||||||||||| || ||||||| | ||| | Sbjct 11099 TCCT--CACTGTGATTTGAAAACAATCCTGGACATTCATTGGGGCACATTAAGGTCCAAT 11042 Query 38003 CTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATAAA 38061 |||||| || ||||| | ||| || ||||| || | ||| ||| ||| || | | Sbjct 11041 CTTCATTGGCCTCCACGCGCTTCATGAACAAATCTGGAATCCA-CATGGCGTAGAACAGA 10983 Query 38062 TCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATA 38121 || || | |||||| || || ||||| | || | ||| || || ||| Sbjct 10982 TCACGGGCACGCATTTCTTCCTTTCCGTGGTTCTTCTTCAATTCCAAAAAGTCAAAAATA 10923 Query 38122 TCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGA 38181 || || ||||| || |||| |||||| | | |||| || || | ||||| ||| Sbjct 10922 TCCGCATGCCAAGGCTCTACATAAATGGCAAAACTTCCTTTTCGCTTCCCGCCTCCTTGA 10863 Query 38182 TTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTG 38241 | || || | | |||| |||| ||| |||| |||||| || |||||||| || | Sbjct 10862 TCAACGTAGCGTGCCGTGTCATTAAATACCCTTAGCATAGGGACAATACCATTGGAAGTA 10803 Query 38242 CCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATT 38301 || || |||||| |||||| | ||| |||| || | ||| || || | ||| ||| Sbjct 10802 CCATTGGTACCGGCTATATATGATCCCGTAGCCCGAACATTGTGAATGGAAAGTCCGATT 10743 Query 38302 CCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATA 38361 || || ||| || || ||| ||| || || || || || | ||||| || ||| Sbjct 10742 CCCCCCGCAGATTGGGAGATTTTCGCGGTCTGCTTCAAGGTGTCGTAAATACCATCGATA 10683 Query 38362 CTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCG 38421 ||||| ||||| || | | || || || ||||| || ||| || ||||||| | Sbjct 10682 CTGTCGTCCTTCATGGCCAATAGGAAGCAGGAGGACATCTGCGGCTTGGGCGTTCCGGAG 10623 Query 38422 TTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCT 38481 || || | ||||| | |||||| |||| |||||| |||| | ||| |||||| Sbjct 10622 TTGAAGAGGGTAGGTGTTGCATGGGTGAAATATTTTTTTGACATCAGCTCATAGGTTTCT 10563 Query 38482 ATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGT 38541 || || || |||||| ||| || || | | || | ||| | |||||| || Sbjct 10562 ATGGCAGAGTCCATATCATTTAAGTGGATTCCAACCGCAACGCGCATCAACATATGCTGG 10503 Query 38542 GGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATT 38601 || | ||| ||| || ||| | ||||| ||||| ||| || || || || | Sbjct 10502 GGCCGTTCGGCTATCTTCCCGTTCAGCTTAAGGAGATAGGATCGCTCCAAGGTCTTGAAG 10443 Query 38602 CCAAAATAACTATATGAATAATCTCTATCGTAT 38634 || || ||| ||| | |||| | || |||| Sbjct 10442 CCGAAGTAATCGTATCCAAAATCACGATTGTAT 10410 Score = 109 bits (120), Expect = 5e-19 Identities = 293/439 (67%), Gaps = 13/439 (3%) Strand=Plus/Minus Query 36817 GCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAA 36876 |||| || ||||||| ||| ||||| || ||||||| || | |||| | |||||| Sbjct 12239 GCCGCCTTGGTTCTCAAATAGTACATCCCTGTTTTTAAACCGCTTTTCCAAGCATAAAAA 12180 Query 36877 TGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTT 36936 |||||| ||||| ||| | || | | ||| || ||| | | ||| ||||| || Sbjct 12179 TGCATAGAGGTCAATTTGGAATAGTTGGCATTTTCCATAAACAAATTCAACGATTGGCTC 12120 Query 36937 TGATCTAT-AAACGCAC-CTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCT 36994 || || || ||| | | | ||| ||||| ||| || | |||| ||| | | || Sbjct 12119 TGGTCAATGAAATACCCTCGCTGACGGCT--CATATCAATAATATCTTTCATACTGAGCT 12062 Query 36995 CCCAAACCGTTTTATATATTTGTTTTATATTATCTGG---TAAATCTAAATGTTGAATAG 37051 |||||||||||||||| | || || ||| |||| || || ||| | || ||||| | Sbjct 12061 CCCAAACCGTTTTATACAATTCCTTAATACTATCGGGAATTATATCAATGTGCTGAATGG 12002 Query 37052 AACCATTATGTAACA-CAATTGTATTCTTTATGTCATTATTCCACATATTTCTA--CTTA 37108 | ||||| || ||| | | |||| || | |||| || ||| | | ||| Sbjct 12001 AGCCATTGGCGCGCATCAACT-CCTGTTTTAGGTTTTCATTC--CAAATTCCGAGTTTTA 11945 Query 37109 TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTG 37168 | ||| ||| || || ||| || || ||| || || || ||||| ||||| | Sbjct 11944 CCAAATCTTCCAAGAGATGCTTATTCACTACGATAAACTCCCCGGACAATACCCTTCTGG 11885 Query 37169 TATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAG 37228 |||| || ||| || || || |||| |||| || || | | |||||| ||||||| Sbjct 11884 TATAAATGTTGGAGGTGTAGGGCTCAAAACACTCGTTGTTCCCCAGTATTTGGGATGTAG 11825 Query 37229 ATGCAGTAGGCATTGGTGC 37247 | || |||||||| || || Sbjct 11824 ACGCGGTAGGCATGGGAGC 11806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467665701213600