Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq10895 259 6e-64 seq83140 104 3e-17 >seq10895 Length=16309 Score = 259 bits (286), Expect = 6e-64 Identities = 866/1337 (65%), Gaps = 27/1337 (2%) Strand=Plus/Minus Query 65721 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 65780 ||||||||| | || | ||| |||| |||||||| ||||| |||| | | | Sbjct 11366 ACAAACATGGGAAGAGCTATAGAGGCCAAGTTACAAACCGCTACTTCATCGGGGGAGGTA 11307 Query 65781 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 65840 |||| | |||||| || |||||||| | | ||| || || || || | ||||| Sbjct 11306 TATTCCAATATCTCGGTACAAAGATTGGAAGATCGGATAGTACCCAAGTTCTTCTGATTG 11247 Query 65841 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 65900 || || || ||||||||||||||| || | || || || || |||||||| ||| Sbjct 11246 CTTTTACGATTGGCCGCATCCTTATAAAGCATATAGGGCGTTCCCGTCTCAATCTGGGAT 11187 Query 65901 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC-TCT 65959 || | || || ||| | | | ||||||| | |||| | ||| || ||| Sbjct 11186 TCCAATATTTTTTCCCATAAATCCCTGGCCTTTACCGT---TTTGCGACCCTTATCCTCT 11130 Query 65960 TTCGTATAGTGTA--TACAATCGTTCGAACTCGTCTCCCCAAACATTGTC--CAATCCAG 66015 | ||| | | || | | ||| || || || | | ||| |||||| | Sbjct 11129 GCCTCATATTTCAAATATAGTTTTTCAAATTCCTCACTGTGAT--TTGAAAACAATCCTG 11072 Query 66016 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 66075 ||||||||| || ||||| || | ||| ||| | | ||| ||| || ||||| || | Sbjct 11071 GACATTCATTGGGGCACATTAAGGTCCAATCTTCATTGGCCTCCACGCGCTTCATGAACA 11012 Query 66076 GATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 66135 ||| |||||||| | || || | ||| | || | ||| || ||||| | Sbjct 11011 AATCTGGAATCCACATGGCGTAGAACAGATCACGGGCACGCATTTCTTCCTTTCCGTGGT 10952 Query 66136 TCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCA 66195 |||| || | || | || | | |||||| |||||| || || | || ||||| | Sbjct 10951 TCTTCTTCAATTCCAAAAAGTCAAAAATATCCGCATGCCAAGGCTCTACATAAATGGCAA 10892 Query 66196 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 66255 | ||| || || ||||| ||||| | ||| | || |||| |||| | || | Sbjct 10891 AACTTCCTTTTCGCTTCCCGCCTCCTTGATCAACGTAGCGTGCCGTGTCATTAAATACCC 10832 Query 66256 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTG 66315 | | ||| || | |||||||||||| ||||||||||| |||| ||||| ||| | | Sbjct 10831 TTAGCATAGGGACAATACCATTGGAAGTACCATTGGTACCGGCTATATATGATCCCGTAG 10772 Query 66316 CACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 66375 | |||| ||| ||| || || || |||||||| || || |||||| ||| Sbjct 10771 CCCGAACATTGTGAATGGAAAGTCCGATTCCCCCCGCAGATTGGGAGATTTTCGCGGTCT 10712 Query 66376 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 66435 | || || || || || || || || ||||| || ||| ||||| | ||| || ||| Sbjct 10711 GCTTCAAGGTGTCGTAAATACCATCGATACTGTCGTCCTTCATGGCCAATAGGAAGCAGG 10652 Query 66436 TAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 66491 ||||| || || || ||||| | || || | |||||| | || || || Sbjct 10651 AGGACATCTG----CGGCTTGGGCGTTCCGGAGTTGAAGAGGGTAGGTGTTGCATGGGTG 10596 Query 66492 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA--T 66549 || |||||| || | || | || || || || || ||||| |||| |||| | | Sbjct 10595 AAATATTTTTTTGACATCAGCTCATAGGTTTCTATGGCAGAGTCCATAT--CATTTAAGT 10538 Query 66550 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 66609 | ||||| || || || ||||| ||||| ||||| || | ||| | ||||| ||| | Sbjct 10537 GGATTCCAACCGCAACGCGCATCAACATATGCTGGGGCCGTTCGGCTATCTTCCCGTTCA 10478 Query 66610 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 66669 || | | |||||| ||||| || || || || || || | |||| ||| || | Sbjct 10477 GCTTAAGGAGATAGGATCGCTCCAAGGTCTTGAAGCCGAAGTAATCGTATCCAAAATCAC 10418 Query 66670 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAA 66729 | | ||| || ||| ||| | ||||| ||| || || | || ||| | || | Sbjct 10417 GATTGTATATGATAGTCGAATCCAGTTTTTCCGAATTTTCGGAAATTACCT-TATAGACC 10359 Query 66730 T-ACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCC 66788 | | |||| || ||| | | ||| || || | ||||| | ||| | | | |||||| Sbjct 10358 TCATCGGAAAGAAGCGGGGCTTTTTTACCCGTTCTGGGATTTATATACTCGTACAAATCC 10299 Query 66789 TCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 66848 | ||| || ||| |||||| || | || |||| ||| || |||| || | | Sbjct 10298 TTCATGGTCTCGGAAAAGGATTTTTTGGTATTCTTATGTAAATTGGAAACGGAAATACGA 10239 Query 66849 GCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCC 66908 ||||| | | |||||||||||||| || || || || || ||||| ||| Sbjct 10238 GCGGCCAATTTTGCATAATCCGGATGCGTAGTGGTCATGGTAGCAGCCTGCTCGGCGGCC 10179 Query 66909 AGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCT 66968 | | ||||||| || || || || |||| ||| | ||| | || ||| |||||| Sbjct 10178 AAATTGTCCAACTCCGAAGTGGTAACACCATCATAAAGTCCCTCTATTACCCGCATAGCC 10119 Query 66969 ATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGAT 67028 | ||| || || |||| | || ||| | ||||||||||| |||||| | | | Sbjct 10118 ACTTTTATGGGGTCTACCAGTTC---GTTGAGGCCATAACATAGTTTTCTGACCCTTGCC 10062 Query 67029 GTGATTTTATCAAACAT 67045 ||||| ||||| ||||| Sbjct 10061 GTGATCTTATCGAACAT 10045 Score = 199 bits (220), Expect = 5e-46 Identities = 587/898 (65%), Gaps = 19/898 (2%) Strand=Plus/Minus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||||||||| || || | |||||| || ||||| ||||| || | || ||| || | Sbjct 9831 TTTTTGGTACTCGGAGACCCTTTTTTCAAAGAAATTGGTTTTCCCCTGTAGTGAAATCAT 9772 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 ||||| ||||| ||||||||| || |||||| | ||||| | || | |||| | Sbjct 9771 ATCCATAAAATCAAATGGATTGGTAGAATTATATACTTTTTCACATTGAAGTTCA---AC 9715 Query 35986 CAAT---CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 36042 |||| || || | |||||||| | |||| |||||| || ||||| || || Sbjct 9714 CAATAGCCTGTCCGTTACAAATTCCAAATATTGGGTCATCAGTTTTGCGTTCATCCCAAT 9655 Query 36043 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 36102 || | || || || | | |||| ||| || |||| ||| | || | ||||| Sbjct 9654 GAGGCTTACAGGTAGGGATTCCGTAATAAACTCGCGTTCTATATCCAAGGCATTTGTTAG 9595 Query 36103 AATAGATATTACTGTTTCTT----CACTCGGTGGATACAATAAATGTTTAAACATCAAAC 36158 ||| | | | | || | ||| || || ||| || || || | Sbjct 9594 AATCTGTGTAATCCTCTCCTTGGGCACCTTGTTGAC-CAAGTGGTGGTTGTGCAAATGAA 9536 Query 36159 ATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 36218 ||| ||||||| || | || || || | ||| ||||| |||||||| || | | Sbjct 9535 CGGCGTAATCGCAATGCATGCCTTCATCACGGGAAATCAATTCATTGGAAAAAGTCAACC 9476 Query 36219 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAA 36278 ||||||||| || | || || | |||||| ||||| ||| | || |||||||||| Sbjct 9475 CGGGCATTAACCCTCTTTTCTTCAACCAAAAAATGGAACAAAAAGCCCCGGAAAAGAAAA 9416 Query 36279 TTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCC 36338 | ||||| || || |||||||| || | || || || ||| | ||| |||| Sbjct 9415 TCCCTTCCACAGCGGCAAAGGCGATCAATCGTTCGGCAAAACTTGGGGAATCA---ATCC 9359 Query 36339 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 36398 | | | |||||||| ||||| || || | || | |||| ||||| | ||| | Sbjct 9358 ATCTAAGCGCCCAATCCGCCTTTTTCTTGATGGCTGGAAAGTTCTCAATAGCCTGAAAAA 9299 Query 36399 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 36458 | ||||||||| || || || ||||| || || ||||| || || |||| | Sbjct 9298 GGATGTTTTTTTCCTTTTCGTCCTTTACATAGGTGTCTATCAACAGGGAGTAGGTTTCGG 9239 Query 36459 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 36518 |||| ||||| || || || || |||||||| || | | ||||| | | || | Sbjct 9238 AATGGATGTTCTCCATCATTATCTGGAATCCGTAAAAGAACTTGGCCTCCGAATATTGGA 9179 Query 36519 CTTCTGT-ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 36577 |||| | ||||||| | | || ||||||||||| || || || || || |||||| Sbjct 9178 CTTCGTTCACAAAATTCT-CGGCCAAATTTTCATTTACAATCCCATCGGATGCGGCAAAA 9120 Query 36578 AACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTA---TTCCAATCA 36634 || ||||| | |||||||||||| || ||||| ||| |||| ||||| ||| Sbjct 9119 AAGGCCAAGATATGTTTTATAAAGTAACGTTCGTCGTCACTTAATTTATCGTTCCAGTCA 9060 Query 36635 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 36694 | ||| | | || ||| | || || | |||||||| | ||||| ||||| Sbjct 9059 GATAAATCCTGATGTAAATCAATCTCCTCGGCGGTCCAAAAACAGGCCTCACATTTTTTG 9000 Query 36695 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752 ||| | ||| | || |||| || ||| || || || |||||||||| | ||||| Sbjct 8999 TACCATTCCCACAAATCGTGATGTTCAATGGGGAATATTACAAATCTATCCTTATTTT 8942 >seq83140 Length=1468 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 ||||| || || | ||| |||||||||| ||| |||||||| |||||||||||| |||| Sbjct 1223 CCAGGGCACTCGTTCGGGCACATCAACGTCCAGTCTCCGTCCTCCTTCACTCGTCTCATG 1282 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 || || ||||||||||| ||| | | || | ||| || | ||| || ||||| || || Sbjct 1283 AACAGGTCAGGAATCCAGAGACCGAAGAAGAGATCCCTCGCTCTGTGCTCCTCCTTGCCG 1342 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 ||||| | ||| ||||| | | | || | ||||| || |||| ||| ||| Sbjct 1343 TGGTTCTTCCGCAAATCCAGGAAGTCAAGGAGGTCTGAGTGCCAGGGCTCCAGGTAGATG 1402 Query 66192 GC 66193 || Sbjct 1403 GC 1404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656965957899600