Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq10895 251 1e-61 seq83140 113 6e-20 seq59511 84.2 3e-11 >seq10895 Length=16309 Score = 251 bits (278), Expect = 1e-61 Identities = 973/1520 (64%), Gaps = 49/1520 (3%) Strand=Plus/Minus Query 79428 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 79487 |||||| | ||||| | |||||| || || | ||| || || ||||| | | |||| || Sbjct 11538 AATAAAGGTATCTGCCAGTCCTTGGACTCCCAAACCTATTGGCCTATGGCGCATATTGGA 11479 Query 79488 AATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTG-- 79545 | |||| ||||| | || || ||||| |||| || | |||| || ||| || Sbjct 11478 ATTTTCCGCTTCCTTTACGGGGTAGTAATTCCTATCAATGACCCTATTAAGGTTCTTGGT 11419 Query 79546 -AC------TATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTAT 79598 || | | || |||| || ||||| | ||||||| || || | Sbjct 11418 CACCCGTTTTGTAACCTTGAACAATTCCTTGTG---------ATCAAATTTGCCCCCTTT 11368 Query 79599 TACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 79658 ||||||||| | || | ||| |||| |||||||| ||||| |||| | | Sbjct 11367 AACAAACATGGGAAGAGCTATAGAGGCCAAGTTACAAACCGCTACTTCATCGGGGGAGGT 11308 Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718 ||||| | ||| || || || || || | | || || || || || | ||||| Sbjct 11307 ATATTCCAATATCTCGGTACAAAGATTGGAAGATCGGATAGTACCCAAGTTCTTCTGATT 11248 Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 || || || ||||||||||||||| || | || || || || |||||||| || Sbjct 11247 GCTTTTACGATTGGCCGCATCCTTATAAAGCATATAGGGCGTTCCCGTCTCAATCTGGGA 11188 Query 79779 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTC-TC 79837 ||| | || || ||| | | | ||||||| | ||| | ||| || || Sbjct 11187 TTCCAATATTTTTTCCCATAAATCCCTGGCCTTTACCGTT---TTGCGACCCTTATCCTC 11131 Query 79838 TT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAA----ACATCGTCTAATC 79891 | || |||| ||||| | ||| || || || | | | | | |||| Sbjct 11130 TGCCTCATATTTCAAATATAGTTTTTCAAATTCCTCACTGTGATTTGAAAAC----AATC 11075 Query 79892 CAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAA 79951 | |||||||| | || ||||| || | ||| ||| ||| ||| || || ||||| | Sbjct 11074 CTGGACATTCATTGGGGCACATTAAGGTCCAATCTTCATTGGCCTCCACGCGCTTCATGA 11015 Query 79952 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 80011 | | ||| |||||||| | || || ||||| | || | || || ||||| Sbjct 11014 ACAAATCTGGAATCCACATGGCGTAGAACAGATCACGGGCACGCATTTCTTCCTTTCCGT 10955 Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071 ||||| || | || | || | | |||||| | |||||| || || | || |||| Sbjct 10954 GGTTCTTCTTCAATTCCAAAAAGTCAAAAATATCCGCATGCCAAGGCTCTACATAAATGG 10895 Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131 | | | ||| ||| || ||||| ||||| | ||| | || |||| |||| | | Sbjct 10894 CAAAACTTCCTTTTCGCTTCCCGCCTCCTTGATCAACGTAGCGTGCCGTGTCATTAAATA 10835 Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 80191 | || | ||| || | |||||||||||| ||||||||||| |||| ||||| ||| Sbjct 10834 CCCTTAGCATAGGGACAATACCATTGGAAGTACCATTGGTACCGGCTATATATGATCCCG 10775 Query 80192 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 80251 | || |||| ||| ||| || || || |||||||| || || |||||| ||| Sbjct 10774 TAGCCCGAACATTGTGAATGGAAAGTCCGATTCCCCCCGCAGATTGGGAGATTTTCGCGG 10715 Query 80252 ATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAAC 80311 | || || || || || || || || || || || || ||||| | ||| || | Sbjct 10714 TCTGCTTCAAGGTGTCGTAAATACCATCGATACTGTCGTCCTTCATGGCCAATAGGAAGC 10655 Query 80312 AGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 80367 || ||||| || || || ||||| | || || | |||||| | || || Sbjct 10654 AGGAGGACATCTG----CGGCTTGGGCGTTCCGGAGTTGAAGAGGGTAGGTGTTGCATGG 10599 Query 80368 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA 80427 || || |||||| |||| || | || || || || || || || |||| |||| | Sbjct 10598 GTGAAATATTTTTTTGACATCAGCTCATAGGTTTCTATGGCAGAGTCCATAT--CATTTA 10541 Query 80428 --TGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTAT 80485 || ||||| ||||| || ||||| ||||| ||||| || | ||| | ||||| | Sbjct 10540 AGTGGATTCCAACCGCAACGCGCATCAACATATGCTGGGGCCGTTCGGCTATCTTCCCGT 10481 Query 80486 TTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 80545 | | || | | || ||| ||||| || || || || || || | |||| ||| | Sbjct 10480 TCAGCTTAAGGAGATAGGATCGCTCCAAGGTCTTGAAGCCGAAGTAATCGTATCCAAAAT 10421 Query 80546 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGG 80605 | || | ||| || ||| ||| | ||||| ||| || || | || ||| | || | Sbjct 10420 CACGATTGTATATGATAGTCGAATCCAGTTTTTCCGAATTTTCGGAAATTACCT-TATAG 10362 Query 80606 TGAT-ACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAA 80664 | | |||| || ||| | | ||| || || | ||||| | ||| | | | ||| Sbjct 10361 ACCTCATCGGAAAGAAGCGGGGCTTTTTTACCCGTTCTGGGATTTATATACTCGTACAAA 10302 Query 80665 TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATT 80724 |||| ||| || ||| |||||| || | ||| |||| ||| || |||| || Sbjct 10301 TCCTTCATGGTCTCGGAAAAGGATTTTTTGGTATTCTTATGTAAATTGGAAACGGAAATA 10242 Query 80725 CTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCT 80784 | ||||| || | |||||||| ||||| || || || || || ||||| Sbjct 10241 CGAGCGGCCAATTTTGCATAATCCGGATGCGTAGTGGTCATGGTAGCAGCCTGCTCGGCG 10182 Query 80785 GCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATA 80844 |||| | ||||||| || || || || |||| ||| | ||| | || ||| |||| Sbjct 10181 GCCAAATTGTCCAACTCCGAAGTGGTAACACCATCATAAAGTCCCTCTATTACCCGCATA 10122 Query 80845 GCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGA 80904 || | ||| || || |||| | || ||| | ||||||||||| |||||| | | Sbjct 10121 GCCACTTTTATGGGGTCTACCAGTTC---GTTGAGGCCATAACATAGTTTTCTGACCCTT 10065 Query 80905 GACGTGATTTTATCAAACAT 80924 | |||||| ||||| ||||| Sbjct 10064 GCCGTGATCTTATCGAACAT 10045 Score = 210 bits (232), Expect = 3e-49 Identities = 584/889 (66%), Gaps = 19/889 (2%) Strand=Plus/Minus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||||||||| || || | |||||| || ||||| ||||| || | | ||| || | Sbjct 9831 TTTTTGGTACTCGGAGACCCTTTTTTCAAAGAAATTGGTTTTCCCCTGTAGTGAAATCAT 9772 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 ||||| |||||||| ||||||||| |||||| | ||||| | || | |||| | Sbjct 9771 ATCCATAAAATCAAATGGATTGGTAGAATTATATACTTTTTCACATTGAAGTTCA---AC 9715 Query 49788 CAAT---CTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 49844 |||| || |||| |||||||| | |||| |||||| || ||||| || || Sbjct 9714 CAATAGCCTGTCCGTTACAAATTCCAAATATTGGGTCATCAGTTTTGCGTTCATCCCAAT 9655 Query 49845 AAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 49904 || | || || || | | |||| ||| || |||| || | |||| ||||| Sbjct 9654 GAGGCTTACAGGTAGGGATTCCGTAATAAACTCGCGTTCTATATCCAAGGCATTTGTTAG 9595 Query 49905 AATAGATCTAACGGTTTCTT----CACTCGGTGGATGCAATAAATGTTTAAACATCAAAC 49960 ||| | ||| | || | ||| || || ||| || || || | Sbjct 9594 AATCTGTGTAATCCTCTCCTTGGGCACCTTGTTGAC-CAAGTGGTGGTTGTGCAAATGAA 9536 Query 49961 ATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTC 50020 ||| ||||||| |||| || || || | ||| | ||| |||||||| || | | Sbjct 9535 CGGCGTAATCGCAATGCATGCCTTCATCACGGGAAATCAATTCATTGGAAAAAGTCAACC 9476 Query 50021 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGA 50080 ||||||||| || | || || | |||||| ||||| ||| | ||| |||||||| | Sbjct 9475 CGGGCATTAACCCTCTTTTCTTCAACCAAAAAATGGAACAAAAAGCCCCGGAAAAGAAAA 9416 Query 50081 TTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCC 50140 | ||||| || ||||||||||| | | || || || |||| | | ||| |||| Sbjct 9415 TCCCTTCCACAGCGGCAAAGGCGATCAATCGTTCGGCAAAACTTGGGGAATCA---ATCC 9359 Query 50141 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 50200 | | | |||||||| ||||| || || | || | | || || || | ||| | Sbjct 9358 ATCTAAGCGCCCAATCCGCCTTTTTCTTGATGGCTGGAAAGTTCTCAATAGCCTGAAAAA 9299 Query 50201 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 50260 | ||||||||| || || || ||||| || || ||||| || || |||| | Sbjct 9298 GGATGTTTTTTTCCTTTTCGTCCTTTACATAGGTGTCTATCAACAGGGAGTAGGTTTCGG 9239 Query 50261 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA 50320 |||| ||||| || || ||||| |||||||| || | | ||||| | | || | Sbjct 9238 AATGGATGTTCTCCATCATTATCTGGAATCCGTAAAAGAACTTGGCCTCCGAATATTGGA 9179 Query 50321 CTTC-TGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379 |||| | ||||||| || || ||||||||||| || || || || || |||||| Sbjct 9178 CTTCGTTCACAAAAT-TCTCGGCCAAATTTTCATTTACAATCCCATCGGATGCGGCAAAA 9120 Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA---TTCCAATCA 50436 || ||||| | |||||||||||| | ||||| | ||| |||| ||||| ||| Sbjct 9119 AAGGCCAAGATATGTTTTATAAAGTAACGTTCGTCGTCACTTAATTTATCGTTCCAGTCA 9060 Query 50437 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 50496 | ||| | | || ||| | || || | |||||||| | ||||| ||||| Sbjct 9059 GATAAATCCTGATGTAAATCAATCTCCTCGGCGGTCCAAAAACAGGCCTCACATTTTTTG 9000 Query 50497 TACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 50545 ||| | ||| | || |||| || || ||||| || |||||||||| Sbjct 8999 TACCATTCCCACAAATCGTGATGTTCAATGGGGAATATTACAAATCTAT 8951 >seq83140 Length=1468 Score = 113 bits (124), Expect = 6e-20 Identities = 298/450 (66%), Gaps = 14/450 (3%) Strand=Plus/Plus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 ||||||||||||||||| |||| ||| || | || ||||| || |||| || Sbjct 1001 ATTTCAGTGCAGAGGTTGGATGACTTGATGCACCCCAGGTTCTGTTGGTTGGACTTTCTG 1060 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 || ||||| || || || || ||| | || ||||| || |||||||| || | ||| Sbjct 1061 TTGCACGCGTCTTTGTACAGCATGTAGGGGGTACCGGTCTCAATCTGGCTCTCCAGAAT- 1119 Query 79789 GCTTT---CCAGA-CGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCT--CTT-TC 79841 ||| ||| | | ||| | ||| | | ||| || | | || ||| || Sbjct 1120 --TTTGAACCACAGCCACTGGGCCCTC----ACGGTCTTCCTTCCCCTGCCTGTCTTCTC 1173 Query 79842 GTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTC 79901 | ||| ||| || || ||||| || ||||| || | ||||| || || Sbjct 1174 GAATTCCTCATACTTTCTCTCAAACTCCTCCCCCCAGCATTCAGACAGCCCAGGGCACTC 1233 Query 79902 GTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGG 79961 || || |||||||||| ||| ||||| || ||||| |||||| |||| || || ||||| Sbjct 1234 GTTCGGGCACATCAACGTCCAGTCTCCGTCCTCCTTCACTCGTCTCATGAACAGGTCAGG 1293 Query 79962 AATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTT 80021 |||||| ||| | | || ||||| || | ||| |||||||| || || ||||| Sbjct 1294 AATCCAGAGACCGAAGAAGAGATCCCTCGCTCTGTGCTCCTCCTTGCCGTGGTTCTTCCG 1353 Query 80022 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 80081 | ||| ||||| | | | || || ||||| || |||| ||| ||||| | || Sbjct 1354 CAAATCCAGGAAGTCAAGGAGGTCTGAGTGCCAGGGCTCCAGGTAGATGGCGAAGGAGCC 1413 Query 80082 CGGTCGTTTGTTTCCTCCCTGATCTATGTA 80111 | |||||| |||||| || || | ||| Sbjct 1414 CTTGCGTTTGCCTCCTCCTTGGTCGACGTA 1443 >seq59511 Length=2170 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 ||| |||||| ||||||| ||| |||||||||||||| | ||| || || |||||||| Sbjct 1461 ACAGCAAACAGCCGAAATCCGCA-TGCAGACCCTCGTCGCGACTGATCAGCTCGTTGGAG 1519 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCA 50048 ||||| || |||||||| || || | ||| || ||||| Sbjct 1520 AACGTCAGACCGGGCATCAGACCTCTCTTCTTCAGCCA 1557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716951764371600