Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq10895 194 2e-44 >seq10895 Length=16309 Score = 194 bits (214), Expect = 2e-44 Identities = 589/897 (66%), Gaps = 36/897 (4%) Strand=Plus/Minus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 |||||| || || || |||||||||||||| || ||||| || | ||||| || | Sbjct 9831 TTTTTGGTACTCGGAGACCCTTTTTTCAAAGAAATTGGTTTTCCCCTGTAGTGAAATCAT 9772 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAG 13699 |||||||||||||||||||| | || || | ||||| ||||| ||||| | | Sbjct 9771 ATCCATAAAATCAAATGGATTGGTAGAATTATATACTTTTTCACATTGAAGTTCAACCAA 9712 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 || || || | | ||| || | |||||| | ||| | | ||||| || || || Sbjct 9711 TAGCCTGTCCGTTACAAATTCCAAATATTGGGTCATCAGTTTTGCGTTCATCCCAATGAG 9652 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 ||||||| | | || | ||| || ||||||| || || | | ||| ||| Sbjct 9651 GCTTACAGGTAGGGATTCCGTAATAAACTCGCGTTCTATATCCAAGGCATTTGTTAGAAT 9592 Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTT------TAGATGTTTAAAAATTAAACA 13873 |||||| |||| || | | | | || | | ||| || | ||| Sbjct 9591 CTGTGTAATCCTCTCCTTGG--GCACCTTGTTGACCAAGTGGTGGTTGTGCAAATGAACG 9534 Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933 || |||| ||||| | ||| ||||| | ||| | ||| || ||||| || || || Sbjct 9533 -GCGTAATCGCAATGCATGCCTTCATCACGGGAAATCAATTCATTGGAAAAAGTCAACCC 9475 Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993 ||||| || |||| ||| || |||||||| || | | ||| | |||||||||||| || Sbjct 9474 GGGCATTAACCCTCTTTTCTTCAACCAAAAAATGGAACAAAAAGCCCCGGAAAAGAAAAT 9415 Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14053 || || || || ||||| || || |||||||| |||| ||| || || Sbjct 9414 CCCTTCCACAGCGGCAAAGGCGATCAATCGTTCGGCAAAA----CTTGGGGAATCAAT-- 9361 Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT-TCAATAGCATTAA 14112 |||| | ||||| || | ||||| || || | | ||| |||||||| | || Sbjct 9360 CCATCTAAGCGCCCAATCCGCCTTTTTCTTGATGGC-TGGAAAGTTCTCAATAGCCTGAA 9302 Query 14113 ATAA-ATATTCCTTCTCTTTA-GTACTTGAAAT--GTATGTATCAATAAGTAAGCTATAC 14168 | | || || || |||| || ||| | || || | |||||| | | | || Sbjct 9301 AAAGGATGTTTTTTTCCTTTTCGTCCTTTACATAGGTGTCTATCAACAGGGAG----TAG 9246 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGAC 14228 |||| || || ||||| ||||| |||||| || || |||||| | | || ||||| Sbjct 9245 GTTTCGGAATGGATGTTCTCCATCATTATCTGGAATCCGTAAAAGAACTTGGCCTCCGAA 9186 Query 14229 CATTGTACTTCCGAGT----AAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14284 |||| ||||| || ||||| | ||||||||||||||||| || || ||||| Sbjct 9185 TATTGGACTTC---GTTCACAAAAT-TCTCGGCCAAATTTTCATTTACAATCCCATCGGA 9130 Query 14285 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT--- 14341 || |||||||| ||||| || | ||| |||||||| | || || | | | ||| Sbjct 9129 TGCGGCAAAAAAGGCCAAGATATGTTTTATAAAGTAACGTTCGTCGTCACTTAATTTATC 9070 Query 14342 TTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14401 ||||| || |||||||||| | | ||| | || || | |||||||||| || | Sbjct 9069 GTTCCAGTCAGATAAATCCTGATGTAAATCAATCTCCTCGGCGGTCCAAAAACAGGCCTC 9010 Query 14402 AGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14458 | |||||| ||| | |||| | || | || | || || || | ||||||||| Sbjct 9009 ACATTTTTTGTACCATTCCCACAAATCGTGATGTTCAATGGGGAATATTACAAATCT 8953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478848358746000