Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq10895 132 5e-26 >seq10895 Length=16309 Score = 132 bits (146), Expect = 5e-26 Identities = 579/901 (64%), Gaps = 44/901 (5%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 |||||| || || || ||||||||||| || || ||||| || | ||||| || | Sbjct 9831 TTTTTGGTACTCGGAGACCCTTTTTTCAAAGAAATTGGTTTTCCCCTGTAGTGAAATCAT 9772 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAA 13487 ||||||||||| |||||||| || || || | ||||| ||||| ||||| | || Sbjct 9771 ATCCATAAAATCAAATGGATTGGTAGAATTATATACTTTTTCACATTGAAGTTCAACCAA 9712 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 || || || | | ||| || | |||||| | ||| | | ||||| || || || Sbjct 9711 TAGCCTGTCCGTTACAAATTCCAAATATTGGGTCATCAGTTTTGCGTTCATCCCAATGAG 9652 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 ||||||| | | || | ||| || ||||||| || || | || | | Sbjct 9651 GCTTACAGGTAGGGATTCCGTAATAAACTCGCGTTCTATATCCAAGGCAT---TTGTTAG 9595 Query 13608 AATCT---TAATAATGTCATTAGAAGGAGGATATTT------TAGATGTTTAAAAATTAA 13658 ||||| |||| | || || | | | | || | | ||| || | | Sbjct 9594 AATCTGTGTAATCCTCTCCTTGG--GCACCTTGTTGACCAAGTGGTGGTTGTGCAAATGA 9537 Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 || || |||| ||||| | ||| ||||| | ||| | ||| || ||||| || || Sbjct 9536 ACG-GCGTAATCGCAATGCATGCCTTCATCACGGGAAATCAATTCATTGGAAAAAGTCAA 9478 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 || ||||| || |||| ||| || |||||||| || | | || | ||||||||||| Sbjct 9477 CCCGGGCATTAACCCTCTTTTCTTCAACCAAAAAATGGAACAAAAAGCCCCGGAAAAGAA 9418 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA 13838 || || || || || ||||| || || | |||||| |||| || | | | Sbjct 9417 AATCCCTTCCACAGCGGCAAAGGCGATCAATCGTTCGGCAAA-----ACTTGGGGAATCA 9363 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT-TCGATTGCAT 13897 |||||| | ||||| || | ||||| || || | | ||| || || || Sbjct 9362 -ATCCATCTAAGCGCCCAATCCGCCTTTTTCTTGAT-GGCTGGAAAGTTCTCAATAGC-C 9306 Query 13898 TGAATAA--ATG-TTCCTTCTCTTTAGTACTTGAAAT--GTATGTATCAATAAGTAAGCT 13952 |||| || ||| || ||| ||| || ||| | || || | |||||| | | | Sbjct 9305 TGAAAAAGGATGTTTTTTTCCTTTTCGTCCTTTACATAGGTGTCTATCAACAGGGA---- 9250 Query 13953 ATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14012 || |||| || || ||||| || || |||||| || || ||||| | | || || Sbjct 9249 GTAGGTTTCGGAATGGATGTTCTCCATCATTATCTGGAATCCGTAAAAGAACTTGGCCTC 9190 Query 14013 TGACCATTGTACCTCCGAGT----AAAATCTTTCTGCCAAGTTTTCATTAACAATACCAT 14068 || |||| || || || ||||| | || ||||| |||||||| ||||| |||| Sbjct 9189 CGAATATTGGACTTC---GTTCACAAAAT-TCTCGGCCAAATTTTCATTTACAATCCCAT 9134 Query 14069 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT 14128 | || |||||||| ||||| || | ||| |||||||| | || || | | | || Sbjct 9133 CGGATGCGGCAAAAAAGGCCAAGATATGTTTTATAAAGTAACGTTCGTCGTCACTTAATT 9074 Query 14129 T---TTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14185 | ||||| || | |||||||| | | ||| | || || | |||||||||| | Sbjct 9073 TATCGTTCCAGTCAGATAAATCCTGATGTAAATCAATCTCCTCGGCGGTCCAAAAACAGG 9014 Query 14186 CGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14245 | || |||||| ||| | |||| | || | || | || || || | |||||||| Sbjct 9013 CCTCACATTTTTTGTACCATTCCCACAAATCGTGATGTTCAATGGGGAATATTACAAATC 8954 Query 14246 T 14246 | Sbjct 8953 T 8953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477711247611600