Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq10895 277 2e-69 seq83140 114 2e-20 >seq10895 Length=16309 Score = 277 bits (306), Expect = 2e-69 Identities = 978/1518 (64%), Gaps = 45/1518 (3%) Strand=Plus/Minus Query 71511 AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGA 71570 |||||| | ||||| | |||||| || || | ||| || || || || | | |||| || Sbjct 11538 AATAAAGGTATCTGCCAGTCCTTGGACTCCCAAACCTATTGGCCTATGGCGCATATTGGA 11479 Query 71571 AATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG-- 71628 | |||| ||||| | || || ||||| |||| || | |||| || || || Sbjct 11478 ATTTTCCGCTTCCTTTACGGGGTAGTAATTCCTATCAATGACCCTATTAAGGTTCTTGGT 11419 Query 71629 -AC------TATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTAT 71681 || | | || |||| || ||||| | ||||||| | || || | Sbjct 11418 CACCCGTTTTGTAACCTTGAACAATTCCTTGTG---------ATCAAATTTGCCCCCTTT 11368 Query 71682 TACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGC 71741 ||||||| | | || | ||| |||| |||||||| ||||| |||| | || Sbjct 11367 AACAAACATGGGAAGAGCTATAGAGGCCAAGTTACAAACCGCTACTTCATCGGGGGAGGT 11308 Query 71742 ATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 71801 ||||| | || || || |||||||| | | ||| || || || || | ||||| Sbjct 11307 ATATTCCAATATCTCGGTACAAAGATTGGAAGATCGGATAGTACCCAAGTTCTTCTGATT 11248 Query 71802 ACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 71861 || || || ||||||||||||||| ||| | || || || || |||||||| || Sbjct 11247 GCTTTTACGATTGGCCGCATCCTTATAAAGCATATAGGGCGTTCCCGTCTCAATCTGGGA 11188 Query 71862 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC-TC 71920 ||| | || || ||| | | | ||||||| | || | | ||| || || Sbjct 11187 TTCCAATATTTTTTCCCATAAATCCCTGGCCTTTACCGTTTT---GCGACCCTTATCCTC 11131 Query 71921 TT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTA--ATCCA 71976 | || |||| ||||| | ||| || || ||| | | ||| | |||| Sbjct 11130 TGCCTCATATTTCAAATATAGTTTTTCAAATTC--CTCACTGTGATTTGAAAACAATCCT 11073 Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAG 72036 ||||||||||| || ||||| || | ||| ||| ||| | | || || ||||| || Sbjct 11072 GGACATTCATTGGGGCACATTAAGGTCCAATCTTCATTGGCCTCCACGCGCTTCATGAAC 11013 Query 72037 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 72096 | ||| |||||||| | || || ||||| | || | || || ||||| Sbjct 11012 AAATCTGGAATCCACATGGCGTAGAACAGATCACGGGCACGCATTTCTTCCTTTCCGTGG 10953 Query 72097 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 72156 ||||| || | || | || | | |||||| | |||||| || || | || ||||| Sbjct 10952 TTCTTCTTCAATTCCAAAAAGTCAAAAATATCCGCATGCCAAGGCTCTACATAAATGGCA 10893 Query 72157 ATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 72216 | | ||| || || ||||| ||||| | ||| | || |||| |||| | || Sbjct 10892 AAACTTCCTTTTCGCTTCCCGCCTCCTTGATCAACGTAGCGTGCCGTGTCATTAAATACC 10833 Query 72217 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 72276 || | ||| || | |||||||||||| | ||||||||| |||| ||||| ||| | Sbjct 10832 CTTAGCATAGGGACAATACCATTGGAAGTACCATTGGTACCGGCTATATATGATCCCGTA 10773 Query 72277 GCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 72336 || |||| |||| ||| || || || |||||||| || || |||||| ||| Sbjct 10772 GCCCGAACATTGTGAATGGAAAGTCCGATTCCCCCCGCAGATTGGGAGATTTTCGCGGTC 10713 Query 72337 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 72396 | || || || || || || || || ||||| || ||| ||||| | ||| || ||| Sbjct 10712 TGCTTCAAGGTGTCGTAAATACCATCGATACTGTCGTCCTTCATGGCCAATAGGAAGCAG 10653 Query 72397 CTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 72452 ||||| || || || ||||| | || || | |||||| | || || || Sbjct 10652 GAGGACATCTG----CGGCTTGGGCGTTCCGGAGTTGAAGAGGGTAGGTGTTGCATGGGT 10597 Query 72453 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA-- 72510 || |||||| |||| || | || || || || || || || |||| |||| | Sbjct 10596 GAAATATTTTTTTGACATCAGCTCATAGGTTTCTATGGCAGAGTCCATAT--CATTTAAG 10539 Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570 || ||||| ||||| || ||||| ||||||||||| || | ||| | ||||| || Sbjct 10538 TGGATTCCAACCGCAACGCGCATCAACATATGCTGGGGCCGTTCGGCTATCTTCCCGTTC 10479 Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 72630 | || | | |||||| ||||| || || || || || || | |||| ||| || Sbjct 10478 AGCTTAAGGAGATAGGATCGCTCCAAGGTCTTGAAGCCGAAGTAATCGTATCCAAAATCA 10419 Query 72631 CGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTG 72690 || | ||| || ||| ||||| ||||| ||| || || | || || | || | Sbjct 10418 CGATTGTATATGATAGTCGAATCCAGTTTTTCCGAATTTTCGGAAATTACCT-TATAGAC 10360 Query 72691 AT-ACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC 72749 | | |||| || ||| | | ||| || || | ||||| | ||| | | | ||||| Sbjct 10359 CTCATCGGAAAGAAGCGGGGCTTTTTTACCCGTTCTGGGATTTATATACTCGTACAAATC 10300 Query 72750 CTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCT 72809 || ||| || ||| |||||| || | ||| |||| ||| || |||| || | Sbjct 10299 CTTCATGGTCTCGGAAAAGGATTTTTTGGTATTCTTATGTAAATTGGAAACGGAAATACG 10240 Query 72810 GGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGC 72869 ||||| | | |||||||| ||||| || || || || || || || || Sbjct 10239 AGCGGCCAATTTTGCATAATCCGGATGCGTAGTGGTCATGGTAGCAGCCTGCTCGGCGGC 10180 Query 72870 CAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 72929 || | ||||||| || || || || |||| ||| | ||| | || ||| |||||| Sbjct 10179 CAAATTGTCCAACTCCGAAGTGGTAACACCATCATAAAGTCCCTCTATTACCCGCATAGC 10120 Query 72930 TATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGA 72989 | ||| || || |||| | || ||| | ||||||||||| |||||| | | | Sbjct 10119 CACTTTTATGGGGTCTACCAGTTC---GTTGAGGCCATAACATAGTTTTCTGACCCTTGC 10063 Query 72990 CGTGATTTTATCAAACAT 73007 |||||| ||||| ||||| Sbjct 10062 CGTGATCTTATCGAACAT 10045 Score = 192 bits (212), Expect = 8e-44 Identities = 580/889 (65%), Gaps = 19/889 (2%) Strand=Plus/Minus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||||||||| || || | |||||| || ||||| || || || | | ||| || | Sbjct 9831 TTTTTGGTACTCGGAGACCCTTTTTTCAAAGAAATTGGTTTTCCCCTGTAGTGAAATCAT 9772 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 ||||| |||||||| ||||||||| |||||| | ||||| | || | |||| | Sbjct 9771 ATCCATAAAATCAAATGGATTGGTAGAATTATATACTTTTTCACATTGAAGTTCA---AC 9715 Query 41893 CAAT---CTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 41949 |||| || || | | ||||| | |||| |||||| || ||||| || || Sbjct 9714 CAATAGCCTGTCCGTTACAAATTCCAAATATTGGGTCATCAGTTTTGCGTTCATCCCAAT 9655 Query 41950 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 42009 || | || || || | | |||| ||| || |||| ||| | || | ||||| Sbjct 9654 GAGGCTTACAGGTAGGGATTCCGTAATAAACTCGCGTTCTATATCCAAGGCATTTGTTAG 9595 Query 42010 AATAGATCTTACTGTTTCTT----CACTCGGTGGATACAATAAATGTTTAAACATCAAAC 42065 ||| | | | | || | ||| || || ||| || || || | Sbjct 9594 AATCTGTGTAATCCTCTCCTTGGGCACCTTGTTGAC-CAAGTGGTGGTTGTGCAAATGAA 9536 Query 42066 ATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 42125 ||| ||||||| |||| || ||||| | ||| ||||| |||||||| || | | Sbjct 9535 CGGCGTAATCGCAATGCATGCCTTCATCACGGGAAATCAATTCATTGGAAAAAGTCAACC 9476 Query 42126 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGA 42185 ||||||||| || | || || | |||||| || || ||| | || |||||||| | Sbjct 9475 CGGGCATTAACCCTCTTTTCTTCAACCAAAAAATGGAACAAAAAGCCCCGGAAAAGAAAA 9416 Query 42186 TTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCC 42245 | ||||| || || |||||||| || | || || || ||| | ||| |||| Sbjct 9415 TCCCTTCCACAGCGGCAAAGGCGATCAATCGTTCGGCAAAACTTGGGGAATCA---ATCC 9359 Query 42246 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 42305 | | | |||||||| ||||| || || | || | | || || || | ||| | Sbjct 9358 ATCTAAGCGCCCAATCCGCCTTTTTCTTGATGGCTGGAAAGTTCTCAATAGCCTGAAAAA 9299 Query 42306 GATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTG 42365 | ||||||||| || || || ||||| || || ||||| || || |||| | Sbjct 9298 GGATGTTTTTTTCCTTTTCGTCCTTTACATAGGTGTCTATCAACAGGGAGTAGGTTTCGG 9239 Query 42366 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTA 42425 |||| ||||| || || ||||| |||||||| || | ||||||| | | || | Sbjct 9238 AATGGATGTTCTCCATCATTATCTGGAATCCGTAAAAGAACTTGGCCTCCGAATATTGGA 9179 Query 42426 CTTCTGT-ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAA 42484 |||| | ||||||| | | || |||||||| || || || || || || |||||| Sbjct 9178 CTTCGTTCACAAAATTCT-CGGCCAAATTTTCATTTACAATCCCATCGGATGCGGCAAAA 9120 Query 42485 AACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA---TTCCAATCA 42541 || ||||| | |||||||||||| || |||||| |||||||| ||||| ||| Sbjct 9119 AAGGCCAAGATATGTTTTATAAAGTAACGTTCGTCGTCACTTAATTTATCGTTCCAGTCA 9060 Query 42542 TTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTA 42601 | ||| | | || ||| | || || | |||||||| | || || ||||| Sbjct 9059 GATAAATCCTGATGTAAATCAATCTCCTCGGCGGTCCAAAAACAGGCCTCACATTTTTTG 9000 Query 42602 TACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTAT 42650 ||| | ||| | ||| |||| || ||| ||||| || |||||||||| Sbjct 8999 TACCATTCCCACAAATCGTGATGTTCAATGGGGAATATTACAAATCTAT 8951 >seq83140 Length=1468 Score = 114 bits (126), Expect = 2e-20 Identities = 302/451 (67%), Gaps = 14/451 (3%) Strand=Plus/Plus Query 71751 AATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 71810 |||||||||||| || || |||||||| || | || ||||| || |||| | Sbjct 1000 AATTTCAGTGCAGAGGTTGGATGACTTGATGCACCCCAGGTTCTGTTGGTTGGACTTTCT 1059 Query 71811 GTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 71870 ||| ||||| || || || || || | || ||||| || |||||||| || | ||| Sbjct 1060 GTTGCACGCGTCTTTGTACAGCATGTAGGGGGTACCGGTCTCAATCTGGCTCTCCAGAAT 1119 Query 71871 CGCTTT---CCAGA-CGACTCGAGCCTTTATTATATTCTTGTATCT-CTTTTCTCTTTCG 71925 ||| ||| | | ||| | ||| | | | ||| | || | | ||| | ||| Sbjct 1120 ---TTTGAACCACAGCCACTGG-GCCCTCACGGTCTTCCTTCCCCTGCCTGTCT-TCTCG 1174 Query 71926 TATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT--GTCTAATCCAGGACATT 71983 ||| ||| || || ||||| || ||||| ||||| | | | ||||| || | Sbjct 1175 AATTCCTCATACTTTCTCTCAAACTCCTCCCCCCA-GCATTCAGAC-AGCCCAGGGCACT 1232 Query 71984 CATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAG 72043 | ||||| |||||||| | ||| ||||| || || || |||||| |||| || || |||| Sbjct 1233 CGTTCGGGCACATCAACGTCCAGTCTCCGTCCTCCTTCACTCGTCTCATGAACAGGTCAG 1292 Query 72044 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTT 72103 ||||||| ||| | | || ||||| || | ||| |||||||| || || ||||| Sbjct 1293 GAATCCAGAGACCGAAGAAGAGATCCCTCGCTCTGTGCTCCTCCTTGCCGTGGTTCTTCC 1352 Query 72104 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 72163 | ||| ||||| | | | || || ||||| || |||| ||| ||||| | | Sbjct 1353 GCAAATCCAGGAAGTCAAGGAGGTCTGAGTGCCAGGGCTCCAGGTAGATGGCGAAGGAGC 1412 Query 72164 CCGGCCGTTTGTTTCCTCCCTGATCTATGTA 72194 || |||||| |||||| || || | ||| Sbjct 1413 CCTTGCGTTTGCCTCCTCCTTGGTCGACGTA 1443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669908582384400