Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq43861 87.8 1e-12 >seq43861 Length=3806 Score = 87.8 bits (96), Expect = 1e-12 Identities = 124/174 (71%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 99393 CTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAAT 99452 ||||||| || || | || ||||| ||||| ||||| ||||||| || | || || Sbjct 2779 CTTGATGGTACCGGTGATGACGTCCACCGAGGGGCGCTGGGTCGCCATGATCAAGTGGAT 2838 Query 99453 GCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGTA 99512 ||||||||| |||||| ||||||||| ||| || ||||| ||||| |||| Sbjct 2839 GCCGGCCGCGCGCGCCATCTGCGCGAGGCGCTGGATCGCCGCCTCCACCTC---CTTGCC 2895 Query 99513 GCCACCCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGTAGGGGAG 99566 | | ||| ||| || || || | || || || | |||||||||||||| || Sbjct 2896 GGCGACCAGCATCAGGTCCGCCATCTCGTCGACGATCACCACGATGTAGGGCAG 2949 Score = 82.4 bits (90), Expect = 5e-11 Identities = 189/278 (68%), Gaps = 10/278 (4%) Strand=Plus/Plus Query 99582 GTGGCGCACGCC-AGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCTCT---ACGGTGA 99637 || ||||||||| |||| || ||| |||||| || || ||||| || |||| Sbjct 3082 GTTGCGCACGCCGAGCCGGCT-CATGGCCCGGTAGCGCTCCTCCATTTCGCGCACGGC-- 3138 Query 99638 GCCACCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGG 99697 |||| |||| ||| |||| | | ||| || ||||| || ||| || |||| Sbjct 3139 -CCACTTGAGCGCGACCACGGCCTTCTTCGGCTCGGTCACCACCGGACTGAGCAGATGGG 3197 Query 99698 GGATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACC 99756 | || || | ||| | | || || | ||| || || |||| |||||||| | | Sbjct 3198 GAATCCCATCGTAGACGCTCAGTTCCAG-CATCTTCGGATCGACCATGATGAAGCGGCAC 3256 Query 99757 CGATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTG 99816 | || || |||||| ||||||||||| | ||| | ||||| | || |||||| Sbjct 3257 CTGTCCGGCCCGTGCCGGTACAGCAGCGAAACGATCATGGCGTTGACGGAGACCGACTTG 3316 Query 99817 CCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCAT 99854 ||||| ||||||| || ||||| ||||| |||||||| Sbjct 3317 CCCGAACCGGTCGTACCGGCCACAAGCAGGTGCGGCAT 3354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354009174428340