Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq10895 138 3e-27 seq57105 86.0 1e-11 seq118334 84.2 5e-11 seq9473 84.2 5e-11 >seq10895 Length=16309 Score = 138 bits (152), Expect = 3e-27 Identities = 390/590 (66%), Gaps = 12/590 (2%) Strand=Plus/Plus Query 268697 GATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATG-TACAAACAGGC 268755 ||||||||||| ||||| || || | ||| ||| | ||| | ||| |||||| | Sbjct 8950 GATAGATTTGTAATATTCCCCATTGAACATCACGATTTGTGG-GAATGGTACAAAAAATG 9008 Query 268756 CGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAA 268815 | || | ||||||||| | || || | ||| | | | || ||| || ||||| Sbjct 9009 TGAGGCCTGTTTTTGGACCGCCGAGGAGATTGATTTACATCAGGATTTATCTGACTGGAA 9068 Query 268816 AAAT---TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGT 268872 || |||| || ||| | |||||| |||| | || |||||||| | Sbjct 9069 CGATAAATTAAGTGACGACGAACGTTACTTTATAAAACATATCTTGGCCTTTTTTGCCGC 9128 Query 268873 TAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA-GAGGTACAGATTC 268931 ||||| || || || |||||| | | ||||| || ||| || || || || | Sbjct 9129 ATCCGATGGGATTGTAAATGAAAATTTGGCCGAGAATTT-TGTGAACGAAGTCCAATATT 9187 Query 268932 CTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGT 268991 | || |||| | |||||||||||||||||| || || || || ||||| || | | Sbjct 9188 CGGAGGCCAAGTTCTTTTACGGATTCCAGATAATGATGGAGAACATCCATTCCGAAACCT 9247 Query 268992 ACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTT 269051 || || || ||||| || ||| || | || | || ||||| || | || ||| Sbjct 9248 ACTCCCTGTTGATAGACACCTATGTAAAGGACGAAAAGGAAAAAAACATCCTTTTTCAGG 9307 Query 269052 CTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAAC 269110 |||| ||||||| | | ||||||| | || ||||| || | |||||| Sbjct 9308 CTATTGAGAACTTTCCAGCCATCAAGAAAAAGG-CGGATTGGGCGCTTAGATGGATT--- 9363 Query 269111 GATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTT 269170 ||| | | || | ||| | || | || ||||||||||| ||||| || |||||| Sbjct 9364 GATTCCCCAAGTTTTGCCGAACGATTGATCGCCTTTGCCGCTGTGGAAGGGATTTTCTTT 9423 Query 269171 TCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACT 269230 || ||| ||||| | || |||||||||||||||||||| | ||||| || || ||| Sbjct 9424 TCCGGGGCTTTTTGTTCCATTTTTTGGTTGAAGAAAAGAGGGTTAATGCCCGGGTTGACT 9483 Query 269231 TTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGC 269280 || || || |||||||| | | || ||||| | || ||||| | ||| Sbjct 9484 TTTTCCAATGAATTGATTTCCCGTGATGAAGGCATGCATTGCGATTACGC 9533 >seq57105 Length=498 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| |||||||| || ||||| || || ||||||||||| || || || || || | || Sbjct 492 CTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGGA 433 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 || ||| || || || || || |||||||| || || || || || || || ||||| Sbjct 432 GTCAGAAGGCTCCACATCAAGAGTGATAGTCTTCCCGGTCAGAGTCTTGACGAAAATCTG 373 Query 104557 CATTTTG 104563 ||||||| Sbjct 372 CATTTTG 366 >seq118334 Length=438 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||| || || ||||||||||| || || |||||||| | || ||| ||| || || Sbjct 437 ATTCCCTCCTTGTCCTGAATCTTCGCCTTCACATTTTCGATGGAGTCGGAAGGCTCGACA 378 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || |||||||| || || || ||||| || || |||||||| ||| Sbjct 377 TCAAGAGTGATAGTCTTGCCGGTCAGAGTTTTCACGAAAATCTGCATATTG 327 >seq9473 Length=1265 Score = 84.2 bits (92), Expect = 5e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||| | ||||| || || || ||||| || || || || | ||| ||||| || || Sbjct 1264 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCGGGGGGA 1205 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || || || ||||| |||||||| || || || || | | || || || || Sbjct 1204 ATCCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATAGAGTCAGAGGGCTCCACA 1145 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || ||||| || || || || || || || |||||||||||| Sbjct 1144 TCGAGAGTGATCGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATTTTG 1094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149234386286520