Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq303 396 3e-105 seq13327 389 5e-103 >seq303 Length=42796 Score = 396 bits (438), Expect = 3e-105 Identities = 700/1016 (69%), Gaps = 6/1016 (1%) Strand=Plus/Minus Query 137865 TTCGATGTCTTGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGA 137924 || ||| | ||||| || | || || | || | ||| ||||||| || || || ||| Sbjct 27710 TTTGATTTATTGGACGATTTTATAAAGCAGGAAAGATTTATATTTGTTGGCTGATCCGGA 27651 Query 137925 CTACTACTTTTTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTT 137984 || | |||||||| || ||||||||||| | || || || || || || || || Sbjct 27650 TTATTGCTTTTTCCGACCGCTTATTTGGCGGTCGGAGGATGATTTGTGGGTACTACTTTC 27591 Query 137985 GTTACAAGCTGGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTC 138044 || ||||| ||||| | || || | || ||||| ||||| ||||| |||||| | Sbjct 27590 GTAACAAGTTGGTATTCTCATGGTCTAGCATCTAGCTATCTAGAAGGTTGTAATTTTTTA 27531 Query 138045 ACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 138104 || || ||||| || || || ||| || ||||| || || ||| | ||| ||| ||| Sbjct 27530 ACTGCTGCTGTATCCACGCCGGCTAATTGCATGGGGCACTCGCTTTTATTACCTTGAGGT 27471 Query 138105 CCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTG 138164 || || |||| ||| | | || |||| ||| |||| || | || | |||| | Sbjct 27470 CCCGAAGCTCAGGGACTTTTAACTCGATGGTATCAAGTTGGAGGTTTATGAAATTTTATC 27411 Query 138165 GCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTC-GCCAGTTTGAGATCTCTCG 138223 || | || ||| |||| | || ||||| || || | || ||||| || | | Sbjct 27410 GCCTTTCATGGGACCTTAGGGTTGGCAGGATTT-TGTTTAAGACAATTTGAAATTGCAAG 27352 Query 138224 TCTGGTAGGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTC 138281 | || ||| | ||||| || || ||||| || ||| | ||||| || || || || Sbjct 27351 GTTAGT--GCAGGTTCGTCCATATAATGCAATTGCTTTCACCGGTCCAATTGCAGTTTTT 27294 Query 138282 GTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTT 138341 || || || | || |||||||| |||||| | ||||| || ||||| || ||| Sbjct 27293 GTATCTGTCTTTTTAATTTATCCTTTAGGTCAAGCGAGTTGATTTTTTGCACCAAGTTTT 27234 Query 138342 GGTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTC 138401 || ||||| || || || |||| | | ||| |||| || || |||||||| || || Sbjct 27233 GGAGTGGCTGCCATTTTTAGATTTTTACTATTCTTTCAAGGGTTTCATAACTGAACACTG 27174 Query 138402 AACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATT 138461 || || || ||||||||||| || ||||||||| | || ||||| | | | ||| || Sbjct 27173 AATCCTTTCCATATGATGGGTGTCGCAGGTATTTTAGGAGGTGCGTTATTGTCTGCCATC 27114 Query 138462 CATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAA 138521 ||||| || || ||| ||||||| || ||| ||||||| | | | || ||| Sbjct 27113 CATGGAGCGACTGTACAAAATACCTTATATAAAGATGGTGTGTCGTATGACACCTTTCGT 27054 Query 138522 GCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGG 138581 || ||| || || ||| |||||| || ||||||||||| || || || |||| || Sbjct 27053 GCTTTTAGCCCAACGCAATTAGAAGAGACTTATTCAATGGTAACCGCAAATCGTTTTTGA 26994 Query 138582 TCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTT 138641 || || || |||||| | |||||| ||| ||||||||| | || ||||||||| | || Sbjct 26993 TCTCAGATTTTTGGAGTAGCTTTTTCTAACAAGCGTTGGTTACATTTCTTTATGTTATTC 26934 Query 138642 GTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTA 138701 || || || | || | || ||| | | |||| || ||||||| || | || || Sbjct 26933 GTACCGGTAACTGGCTTATGAACTTCTGCTTTTGGGATGGTTGGTCTGGCCTTAAATTTA 26874 Query 138702 CGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACC 138761 | || || ||||| || || ||||| | || ||||| ||||||||||||||||| || Sbjct 26873 AGGGCATACGATTTTGTGTCTCAAGAGTTACGAGCAGCCGAAGATCCTGAATTCGAAACG 26814 Query 138762 TTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGAT 138821 || || ||||| || || | || |||||||| | ||||| || |||||| ||| Sbjct 26813 TTTTATACCAAAAATATATTGCTTAATGAAGGAATCCGTGCTTGAATGGCTATGCAGGAC 26754 Query 138822 CAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 |||||||| ||||| || |||| || || ||||| || || | || || ||||| Sbjct 26753 CAACCTCATGAAAATTTCATTTTCCCAGAGGAAGTTTTACCTCGCGGAAATGCTCT 26698 >seq13327 Length=3816 Score = 389 bits (430), Expect = 5e-103 Identities = 648/934 (69%), Gaps = 2/934 (0%) Strand=Plus/Minus Query 135395 ACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTGATGATTCCTACTCTTCTCGCA 135454 || ||| ||| || ||| | || ||||||||| | ||| | || || | | | Sbjct 2804 ACAGACCGCCGTCTATATATCGGATGGTTTGGATTATTAATGGTGCCAACGTTATTATTA 2745 Query 135455 GCTGCTATC-TGCTTTATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTGACGGCAT 135513 || | |||| || || |||| |||||| | || ||||| || || |||||||| || || Sbjct 2744 GCAG-TATCGTGTTTCATTGCTGCTTTTGTAGCCGCACCGCCAGTAGATATTGATGGAAT 2686 Query 135514 CCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTAT 135573 || || || ||| | || ||||| | ||||||||||| || ||||| || || || | Sbjct 2685 TCGTGAGCCAGTTTCAGGCTCTCTTCTATACGGAAATAATATTATCTCAGGAGCCGTAGT 2626 Query 135574 CCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGA 135633 || | || || || || | || || ||| | | || || || | | |||| Sbjct 2625 ACCGAGTTCAAATGCTATTGGTATGCATTTGTATACGGTGTGAGATGCGATGTGTATTGA 2566 Query 135634 TGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGT 135693 || || | ||||| || || ||||| ||| | || || | || ||| | ||||| || Sbjct 2565 GGAATGATTGTATAACGGAGGACCTTACCAATTCGTTGTACTACATTTCTTAATCGGGGT 2506 Query 135694 CTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGAT 135753 || || | ||||| ||||| ||| | |||||| | || ||||| ||||| || Sbjct 2505 AGCATCATATCTTGGTCGTGAGTGAGAATTAAGTTACCGTTTAGGAATGCGTCCTTGAAT 2446 Query 135754 TTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTT 135813 || || |||| ||| || || ||||| || || | ||||| || || || ||||| | Sbjct 2445 TTTCGTAGCTTTCTCTGCACCAGTTGCAGCAGCATCGGCTGTATTTCTAGTTTACCCAAT 2386 Query 135814 TGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACAT 135873 |||||||| ||||| ||||| ||||| || || ||||||||||| || |||| ||| Sbjct 2385 CGGACAAGGATCTTTTTCAGATGGAATGCCTCTAGGAATTTCTGGAACATTCAACTTCAT 2326 Query 135874 GCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGC 135933 ||| || ||||||||||| || || || | ||||| |||||||||||| ||||| || Sbjct 2325 GCTAGTATTCCAGGCAGAGCATAATATCTTAATGCACCCTTTCCACATGGCTGGAGTGGC 2266 Query 135934 TGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCT 135993 || || || || || ||| | || |||||||||||||||| | || || || | | | Sbjct 2265 AGGAGTATTTGGAGGATCTTTATTTAGTGCTATGCATGGATCTTTAGTTACATCAACTTT 2206 Query 135994 TGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGA 136053 | | ||| | ||| | ||||| | || ||||| || || ||||| || ||| | Sbjct 2205 AATTTCTATGACTAGTGAAGATGAATCACCTAATTATGGGTATAAATTCGGACAGGAATA 2146 Query 136054 AGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGC 136113 || || || || || || || || || || |||||||| ||||| ||||| |||| || Sbjct 2145 TGAAACATATAATATCGTAGCCGCGCACGGATACTTCGGGCGTCTAATCTTTCAATTCGC 2086 Query 136114 GTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTAT 136173 || || ||||| ||||| ||||||| |||||||| ||| || || || || || Sbjct 2085 AAGTTTTAATAACTCACGTTCTTTACACTTCTTCCTTGCAATTTGACCGGTAGTTGGAAT 2026 Query 136174 CTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAACCTCAATGGATTCAACTTCAA 136233 ||| || | || |||| | ||| ||||| ||||| || ||||||||||| ||||| Sbjct 2025 CTGATTAACAGCAATGGGAATTAGTACTATGGCTTTCAATCTAAATGGATTCAATTTCAA 1966 Query 136234 CCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACACCTGGGCAGATGTGCTGAATCG 136293 ||| || || | | | ||||| |||||| | | || || ||| | | ||||| Sbjct 1965 CCAATCAATCATTGATGCAGAAGGACGTGTAATTTCGAGTTGAGCCGATATCTTAAATCG 1906 Query 136294 TGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 ||| ||| || ||||| || ||||| |||||| Sbjct 1905 TGCAAATCTAGGAATGGAAGTAATGCATGAGCGT 1872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626816542176000