Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq13327 408 7e-109 seq4620 140 5e-28 >seq13327 Length=3816 Score = 408 bits (452), Expect = 7e-109 Identities = 619/878 (71%), Gaps = 12/878 (1%) Strand=Plus/Minus Query 211681 GCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTAT 211740 || ||||| || || ||||| || ||||| ||||| ||||| | || || | | || Sbjct 2714 GCCGCACCGCCAGTAGATATTGATGGAATTCGTGAGCCAGTTTCAGGCTCTCTTCTATAC 2655 Query 211741 GGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTC 211800 || || || || ||||| || || || || || |||||| || || ||| | || || Sbjct 2654 GGAAATAATATTATCTCAGGAGCCGTAGTACCGAGTTCAAATGCTATTGGTATGCATTTG 2595 Query 211801 TATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAG 211860 ||| | | || || || | |||| || || | || || || || |||||||| Sbjct 2594 TATACGGTGTGAGATGCGATGTGTATTGAGGAATGATTGTATAACGGAGGACCTTACCAA 2535 Query 211861 TTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTT 211920 || || | | || ||| | ||||| | || |||| | || | |||| ||| | Sbjct 2534 TTCGTTGTACTACATTTCTTAATCGGGGTAGCATCATATCTTGGTCGTGAGTGAGAATTA 2475 Query 211921 TCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCA 211980 ||||||||||| ||||||||||| || | || |||| || ||||| || ||||| Sbjct 2474 AGTTACCGTTTAGGAATGCGTCCTTGAATTTTCGTAGCTTTCTCTGCACCAGTTGCAGCA 2415 Query 211981 GCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCT 212040 || | |||||||| || ||||||||| |||| || || || || ||||| || |||||| Sbjct 2414 GCATCGGCTGTATTTCTAGTTTACCCAATCGGACAAGGATCTTTTTCAGATGGAATGCCT 2355 Query 212041 TTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTT 212100 |||| || || |||||||||||||||||| | |||||||| ||||| ||||| ||| | Sbjct 2354 CTAGGAATTTCTGGAACATTCAACTTCATGCTAGTATTCCAGGCAGAGCATAATATCTTA 2295 Query 212101 ATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCT 212160 |||||||| ||||| ||||| || || ||||| | || || ||| | ||||| |||| Sbjct 2294 ATGCACCCTTTCCACATGGCTGGAGTGGCAGGAGTATTTGGAGGATCTTTATTTAGTGCT 2235 Query 212161 ATGCACGGTTCTCTTGTTACAT---CTTCACTTATCCGTGAAACCACTGGTTTAGAT--- 212214 ||||| || ||| | ||||||| ||| | || || || ||| || |||| Sbjct 2234 ATGCATGGATCTTTAGTTACATCAACTTTAATT-TCTATG-----ACTAGTGAAGATGAA 2181 Query 212215 TCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCA 212274 |||| || ||||| || || |||||||| ||| | || |||||||| ||||| || || Sbjct 2180 TCACCTAATTATGGGTATAAATTCGGACAGGAATATGAAACATATAATATCGTAGCCGCG 2121 Query 212275 CATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTA 212334 || ||||||||||| | || ||||| || | ||| || || ||| | |||| Sbjct 2120 CACGGATACTTCGGGCGTCTAATCTTTCAATTCGCAAGTTTTAATAACTCACGTTCTTTA 2061 Query 212335 CACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGC 212394 ||||||||||| ||| || || || | | | || ||||| | ||||| || | Sbjct 2060 CACTTCTTCCTTGCAATTTGACCGGTAGTTGGAATCTGATTAACAGCAATGGGAATTAGT 2001 Query 212395 ACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGT 212454 || ||||| ||||| |||||||||||||| |||||||||||| | |||||||| ||| Sbjct 2000 ACTATGGCTTTCAATCTAAATGGATTCAATTTCAACCAATCAATCATTGATGCAGAAGGA 1941 Query 212455 AAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATG 212514 || || | | ||| | ||| | | || | ||||| || || |||||||| ||| Sbjct 1940 CGTGTAATTTCGAGTTGAGCCGATATCTTAAATCGTGCAAATCTAGGAATGGAAGTAATG 1881 Query 212515 CACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 || || | || || ||||| ||||| || || ||||| Sbjct 1880 CATGAGCGTAACGCGCACAATTTCCCTCTAGATTTAGC 1843 >seq4620 Length=65515 Score = 140 bits (154), Expect = 5e-28 Identities = 349/528 (66%), Gaps = 4/528 (1%) Strand=Plus/Minus Query 193639 AACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGC 193698 |||| | ||||||||| || |||| ||| ||||| |||||| | || || || | Sbjct 49445 AACCGGATGAGATCTACAACCTTGCTGCGCAAAGCCATGTTCAGGTGAGTTTCGAAACCG 49386 Query 193699 CAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTA 193758 | ||||| || | |||| |||||| | || || | | | || || || | || | Sbjct 49385 CCGAGTACACCGCCAATGCCGATGCTCTGGGTACGTTGCGGTTGCTCGAGGCGATACGCA 49326 Query 193759 TGTTGGGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTG 193818 | |||| |||||||| | ||| |||||||||| || || ||||| || || Sbjct 49325 TTCTGGGGATGGAGAAGTCGGCCCGCTTCTATCAGGCGTCGACTTCGGAACTCTACGGCA 49266 Query 193819 GTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTG 193878 |||| | || || | || || ||||| || || |||| ||||| || |||| | Sbjct 49265 AGGTTCAGGAAACGCCGCAGTCCGAGACCACGCCTTTCTATCCTCGCTCGCCCTATGCCG 49206 Query 193879 TAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACG 193938 || ||| |||||| ||| ||| ||| ||| ||||| || | ||||| | || | Sbjct 49205 CCGCCAAGCTGTATGCTTACTGGGTCACTGTGAACTATCGCGAAGCCTATGGGCTGCATG 49146 Query 193939 CTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTC 193998 || || || |||||||||||||| |||| | || ||||| || || || | Sbjct 49145 CTTCAAACGGCATCCTCTTCAATCACGAGAGCCCAATCCGTGGCGAGACTTTCGTGACCC 49086 Query 193999 GTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATT--CTTTATCT 194056 | ||||| || | | | | |||| | || ||| |||| |||||||| Sbjct 49085 GCAAGATCACGCGGGCCGTGGCCGCGATCCATTACGGTCGCCAG--GATTGCCTTTATCT 49028 Query 194057 TGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTG 194116 |||||||| |||| |||||||||| ||||| || ||||| |||| ||||| Sbjct 49027 CGGTAATCTCGATGCCCGACGGGATTGGGGTCACGCCCGCGACTATGTGGAAGGCATGTG 48968 Query 194117 GTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGG 194164 ||| ||| |||| ||||| ||||| || ||||| |||| || || Sbjct 48967 GTTGATGATGCAGCAGGAATCGCCCGACGACTATGTACTTGCGACGGG 48920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 806074446596400