Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq13327 407 2e-108 seq303 295 8e-75 >seq13327 Length=3816 Score = 407 bits (450), Expect = 2e-108 Identities = 626/893 (70%), Gaps = 0/893 (0%) Strand=Plus/Minus Query 170756 TGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCA 170815 |||||||||| || || | || || || ||||| ||||| || ||||| | || ||| Sbjct 2735 TGTTTCATTGCTGCTTTTGTAGCCGCACCGCCAGTAGATATTGATGGAATTCGTGAGCCA 2676 Query 170816 GTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCA 170875 ||| | || ||| | |||| || || || || ||||| || || ||||| || |||| Sbjct 2675 GTTTCAGGCTCTCTTCTATACGGAAATAATATTATCTCAGGAGCCGTAGTACCGAGTTCA 2616 Query 170876 AACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTG 170935 || || || || | || || ||| | | || || || ||| || || || ||| Sbjct 2615 AATGCTATTGGTATGCATTTGTATACGGTGTGAGATGCGATGTGTATTGAGGAATGATTG 2556 Query 170936 TACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTAC 170995 || |||||||| |||||||| || ||| | | || ||| | || || | | | || Sbjct 2555 TATAACGGAGGACCTTACCAATTCGTTGTACTACATTTCTTAATCGGGGTAGCATCATAT 2496 Query 170996 ATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCA 171055 | ||| | |||| ||| || ||| | |||||||| | ||||| || | ||||| Sbjct 2495 CTTGGTCGTGAGTGAGAATTAAGTTACCGTTTAGGAATGCGTCCTTGAATTTTCGTAGCT 2436 Query 171056 TACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGT 171115 | ||| ||||| || | ||||||| || ||||| || || || ||| |||| || || Sbjct 2435 TTCTCTGCACCAGTTGCAGCAGCATCGGCTGTATTTCTAGTTTACCCAATCGGACAAGGA 2376 Query 171116 TCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTC 171175 || || || ||||| ||||| ||||| || || || || |||||||||||| | || ||| Sbjct 2375 TCTTTTTCAGATGGAATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGCTAGTATTC 2316 Query 171176 CAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTC 171235 || ||||| || || || |||||||||| ||||| ||||| || || ||||| | || Sbjct 2315 CAGGCAGAGCATAATATCTTAATGCACCCTTTCCACATGGCTGGAGTGGCAGGAGTATTT 2256 Query 171236 GGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAG 171295 || || | | || ||||| ||||| || ||| |||| ||||| || |||| | Sbjct 2255 GGAGGATCTTTATTTAGTGCTATGCATGGATCTTTAGTTACATCAACTTTAATTTCTATG 2196 Query 171296 ACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATAT 171355 || | ||| | || | || || || ||||| |||||||| ||| | ||||||||| Sbjct 2195 ACTAGTGAAGATGAATCACCTAATTATGGGTATAAATTCGGACAGGAATATGAAACATAT 2136 Query 171356 AACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAAC 171415 || || || || || || ||||||||||| | ||||||| || | ||| || || Sbjct 2135 AATATCGTAGCCGCGCACGGATACTTCGGGCGTCTAATCTTTCAATTCGCAAGTTTTAAT 2076 Query 171416 AACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACC 171475 ||||| ||||| |||||||||||||| || | | || ||||| | | || ||||| Sbjct 2075 AACTCACGTTCTTTACACTTCTTCCTTGCAATTTGACCGGTAGTTGGAATCTGATTAACA 2016 Query 171476 TCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTT 171535 | ||||| || |||| ||||| ||||| || || |||||||| |||||||||||| | Sbjct 2015 GCAATGGGAATTAGTACTATGGCTTTCAATCTAAATGGATTCAATTTCAACCAATCAATC 1956 Query 171536 GTAGATGCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTT 171595 | |||||| | ||| | | | | || | ||| | | || | ||||| || Sbjct 1955 ATTGATGCAGAAGGACGTGTAATTTCGAGTTGAGCCGATATCTTAAATCGTGCAAATCTA 1896 Query 171596 GGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 171648 ||||||||||| |||||||| | || || ||||| ||||| ||||| |||| Sbjct 1895 GGAATGGAAGTAATGCATGAGCGTAACGCGCACAATTTCCCTCTAGATTTAGC 1843 >seq303 Length=42796 Score = 295 bits (326), Expect = 8e-75 Identities = 670/1003 (67%), Gaps = 31/1003 (3%) Strand=Plus/Minus Query 171835 TATTCATCGGATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTT 171894 |||| | || || || || | || ||||| || ||||| | || ||||||| | Sbjct 27670 TATTTGTTGGCTGATCCGGATTATTGCTTTTTCCGACCGCTTATTTGGCGGTCGGAGGAT 27611 Query 171895 GGTTCGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATC 171954 | || || || ||||||||||| || ||||| | |||||| | ||||| |||| Sbjct 27610 GATTTGTGGGTACTACTTTCGTAACAAGTTGGTATTCTCATGGTCTAGCATCTAGCTATC 27551 Query 171955 TTGAGGGAGCAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATA 172014 | || || || ||||||||||| || ||||| || || | | || ||||| || Sbjct 27550 TAGAAGGTTGTAATTTTTTAACTGCTGCTGTATCCACGCCGGCTAATTGCATGGGGCACT 27491 Query 172015 GTCTATTGTTCCTATGGGGACCTGAGGCACAAGGAGATCTTGTA---CGATGGTTTCAAT 172071 || || || | || || || || || || ||| ||| || ||||||| |||| Sbjct 27490 CGCTTTTATTACCTTGAGGTCCCGAAGCTCAGGGA---CTTTTAACTCGATGGTATCAAG 27434 Query 172072 TAGGTGGACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGC 172131 | || || |||| || ||| | || || ||||| ||| || | ||| || || Sbjct 27433 TTGGAGGTTTATGAAATTTTATCGCCTTTCATGGGACCTTAGGGTTGGCAGGATTT-TGT 27375 Query 172132 TTA-GACAGTTTGAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTC 172190 ||| |||| ||||| |||||| | | || | | ||||| || || ||| | || ||| Sbjct 27374 TTAAGACAATTTGAAATTGCAAGGTTAGTGCAGGTTCGTCCATATAATGCAATTGCTTTC 27315 Query 172191 TCAGCAGTTATTGCAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGT 172250 | | |||||||| || ||||| |||| ||||| |||||||| ||| Sbjct 27314 ACCGGTCCAATTGCAGTTTTTGTATCTGTCTTTTTAATTTATCCTTTAGGTCAAGCGAGT 27255 Query 172251 TGGTTCTTCGCACCTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAG 172310 || || || ||||| ||||| || || || || ||| | | | | ||||| | || Sbjct 27254 TGATTTTTTGCACCAAGTTTTGGAGTGGCTGCCATTTTTAGATTTTTACTATTCTTTCAA 27195 Query 172311 GGTTTCCACAATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGT 172370 || || || || ||| || ||||| || |||||||||||||| |||||||| | || Sbjct 27194 GGGTTTCATAACTGAACACTGAATCCTTTCCATATGATGGGTGTCGCAGGTATTTTAGGA 27135 Query 172371 GGAGCATTACTATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACA 172430 || || ||| | | |||||| ||||| || || ||||| || || || ||| || Sbjct 27134 GGTGCGTTATTGTCTGCCATCCATGGAGCGACTGTACAAAATACCTTATATAAA------ 27081 Query 172431 TCACAATACACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAG 172490 || ||| | || ||| ||||| | || || || || || Sbjct 27080 ------------GATGGT--GTGTCGTATGACACCTTTC-GTGCTTTTAGCCCAACGCAA 27036 Query 172491 GAAGAAGAAACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATA 172550 |||||| |||||| ||| | || || || | || || || ||||| ||||| || Sbjct 27035 TTAGAAGAGACTTATTCAATGGTAACCGCAAATCGTTTTTGATCTCAGATTTTTGGAGTA 26976 Query 172551 GCATTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATG 172610 || ||||| ||||| | | ||||| ||| ||||||| |||||||| || | || | Sbjct 26975 GCTTTTTCTAACAAGCGTTGGTTACATTTCTTTATGTTATTCGTACCGGTAACTGGCTTA 26916 Query 172611 TGGACATCATCTATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTA 172670 || || || || | || || || ||||| || | || | || |||||||| ||||| Sbjct 26915 TGAACTTCTGCTTTTGGGATGGTTGGTCTGGCCTTAAATTTAAGGGCATACGATTTTGTG 26856 Query 172671 TCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATT 172730 ||||||||| || ||||||| ||||| || || || ||||| || || || || || || Sbjct 26855 TCTCAAGAGTTACGAGCAGCCGAAGATCCTGAATTCGAAACGTTTTATACCAAAAATATA 26796 Query 172731 CTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTG-TCGATCAACCCCATGAGAACTT 172789 | ||||||||||| || | || || ||| | | || || ||||| ||||| || || Sbjct 26795 TTGCTTAATGAAGGAATCCGTGCTTGAATGGC-TATGCAGGACCAACCTCATGAAAATTT 26737 Query 172790 TGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 172832 | |||||||| ||||| || || || || || || || ||| Sbjct 26736 CATTTTCCCAGAGGAAGTTTTACCTCGCGGAAATGCTCTCTAA 26694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569223140871600