Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq10895 260 2e-64 seq83140 113 6e-20 seq59511 84.2 3e-11 >seq10895 Length=16309 Score = 260 bits (288), Expect = 2e-64 Identities = 878/1356 (65%), Gaps = 27/1356 (2%) Strand=Plus/Minus Query 62858 ATCAAATCGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGC 62917 ||||||| || || | ||||||||| | || | ||| |||| |||||||| || Sbjct 11385 ATCAAATTTGCCCCCTTTAACAAACATGGGAAGAGCTATAGAGGCCAAGTTACAAACCGC 11326 Query 62918 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGT 62977 ||| |||| | | ||||| | |||||| || |||||||| | | |||||| Sbjct 11325 TACTTCATCGGGGGAGGTATATTCCAATATCTCGGTACAAAGATTGGAAGATCGGATAGT 11266 Query 62978 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 63037 || || || | ||||| || || || ||||||||||||||| || | || || Sbjct 11265 ACCCAAGTTCTTCTGATTGCTTTTACGATTGGCCGCATCCTTATAAAGCATATAGGGCGT 11206 Query 63038 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA 63097 || || |||||||| ||||| | || || ||| | | | ||||||| | Sbjct 11205 TCCCGTCTCAATCTGGGATTCCAATATTTTTTCCCATAAATCCCTGGCCTTTACCGT--- 11149 Query 63098 TTTGTATCTCCTTTC-TCTTTCGTATAGTGTA--TACAATCGTTCGAACTCGTCTCCCCA 63154 |||| | | | || ||| | ||| | | || | | ||| || || || | Sbjct 11148 TTTGCGACCCTTATCCTCTGCCTCATATTTCAAATATAGTTTTTCAAATTCCTCACTGTG 11089 Query 63155 AACATTGTC--CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 63212 | ||| |||||| |||||||||| || ||||| || | ||| ||| | | || Sbjct 11088 AT--TTGAAAACAATCCTGGACATTCATTGGGGCACATTAAGGTCCAATCTTCATTGGCC 11031 Query 63213 TTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTA 63272 | ||| || ||||| || | ||| |||||||| | || || ||||| | || | Sbjct 11030 TCCACGCGCTTCATGAACAAATCTGGAATCCACATGGCGTAGAACAGATCACGGGCACGC 10971 Query 63273 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63332 ||| || ||||| ||||| || | || | || | | |||||| | |||||| Sbjct 10970 ATTTCTTCCTTTCCGTGGTTCTTCTTCAATTCCAAAAAGTCAAAAATATCCGCATGCCAA 10911 Query 63333 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63392 || || | || ||||| | | ||| || || ||||| ||||| | ||| | Sbjct 10910 GGCTCTACATAAATGGCAAAACTTCCTTTTCGCTTCCCGCCTCCTTGATCAACGTAGCGT 10851 Query 63393 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCG 63452 || |||| |||| | || || | ||| || | |||||| || || |||||||||||||| Sbjct 10850 GCCGTGTCATTAAATACCCTTAGCATAGGGACAATACCATTGGAAGTACCATTGGTACCG 10791 Query 63453 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 63512 | ||||| ||| | || |||| ||| ||| || || || |||||||| || | Sbjct 10790 GCTATATATGATCCCGTAGCCCGAACATTGTGAATGGAAAGTCCGATTCCCCCCGCAGAT 10731 Query 63513 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATC 63572 | |||||| ||| | || || ||||| || ||||| || || || || || || Sbjct 10730 TGGGAGATTTTCGCGGTCTGCTTCAAGGTGTCGTAAATACCATCGATACTGTCGTCCTTC 10671 Query 63573 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAA 63628 ||| | ||| || ||| ||||| || || || ||||| | || || | Sbjct 10670 ATGGCCAATAGGAAGCAGGAGGACATCTG----CGGCTTGGGCGTTCCGGAGTTGAAGAG 10615 Query 63629 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63688 |||||| | || || || || |||||| || | || | || || || || || || Sbjct 10614 GGTAGGTGTTGCATGGGTGAAATATTTTTTTGACATCAGCTCATAGGTTTCTATGGCAGA 10555 Query 63689 GTCTATATCCCATTGA--TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63746 ||| |||| |||| | || ||||| || || || ||||| ||||| ||||| || | | Sbjct 10554 GTCCATAT--CATTTAAGTGGATTCCAACCGCAACGCGCATCAACATATGCTGGGGCCGT 10497 Query 63747 TCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63806 || | ||||| ||| | || | | |||||| ||||| || || || || || Sbjct 10496 TCGGCTATCTTCCCGTTCAGCTTAAGGAGATAGGATCGCTCCAAGGTCTTGAAGCCGAAG 10437 Query 63807 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTG 63866 || | |||| ||| || || | ||| || ||| ||| | ||||| ||| || || | Sbjct 10436 TAATCGTATCCAAAATCACGATTGTATATGATAGTCGAATCCAGTTTTTCCGAATTTTCG 10377 Query 63867 TTAACTATATCCATGGTGAT-ACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATT 63925 || || | || | | | |||| || ||| | | ||| || || | ||||| Sbjct 10376 GAAATTACCT-TATAGACCTCATCGGAAAGAAGCGGGGCTTTTTTACCCGTTCTGGGATT 10318 Query 63926 AACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAG 63985 | ||| | | | ||||||| ||| || ||| |||||| || | ||| |||| Sbjct 10317 TATATACTCGTACAAATCCTTCATGGTCTCGGAAAAGGATTTTTTGGTATTCTTATGTAA 10258 Query 63986 ATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT 64045 ||| || |||| || | ||||| | | |||||||||||||| || || || Sbjct 10257 ATTGGAAACGGAAATACGAGCGGCCAATTTTGCATAATCCGGATGCGTAGTGGTCATGGT 10198 Query 64046 GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCC 64105 || || ||||| |||| | ||||||| || || || || |||| ||| | ||| Sbjct 10197 AGCAGCCTGCTCGGCGGCCAAATTGTCCAACTCCGAAGTGGTAACACCATCATAAAGTCC 10138 Query 64106 TTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAACA 64165 | || ||| |||||| | ||| || || |||| | || ||| | ||||||||| Sbjct 10137 CTCTATTACCCGCATAGCCACTTTTATGGGGTCTACCAGTTC---GTTGAGGCCATAACA 10081 Query 64166 TAATTTTCTAATACGAGACGTGATTTTATCAAACAT 64201 || |||||| | | | |||||| ||||| ||||| Sbjct 10080 TAGTTTTCTGACCCTTGCCGTGATCTTATCGAACAT 10045 Score = 201 bits (222), Expect = 1e-46 Identities = 582/889 (65%), Gaps = 19/889 (2%) Strand=Plus/Minus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||||||||| || || | |||||| || ||||| ||||| || | | ||| || | Sbjct 9831 TTTTTGGTACTCGGAGACCCTTTTTTCAAAGAAATTGGTTTTCCCCTGTAGTGAAATCAT 9772 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 ||||| |||||||| ||||||||| |||||| | ||||| | || | |||| | Sbjct 9771 ATCCATAAAATCAAATGGATTGGTAGAATTATATACTTTTTCACATTGAAGTTCA---AC 9715 Query 33132 CAAT---CTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 33188 |||| || |||| || ||||| | |||| |||||| || ||||| || || Sbjct 9714 CAATAGCCTGTCCGTTACAAATTCCAAATATTGGGTCATCAGTTTTGCGTTCATCCCAAT 9655 Query 33189 AAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 33248 || | || || || | | |||| ||| || |||| || | |||| ||||| Sbjct 9654 GAGGCTTACAGGTAGGGATTCCGTAATAAACTCGCGTTCTATATCCAAGGCATTTGTTAG 9595 Query 33249 AATAGATCTAACGGTTTCTT----CACTCGGTGGATGCAATAAATGTTTAAACATCAAAC 33304 ||| | ||| | || | ||| || || ||| || || || | Sbjct 9594 AATCTGTGTAATCCTCTCCTTGGGCACCTTGTTGAC-CAAGTGGTGGTTGTGCAAATGAA 9536 Query 33305 ATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTC 33364 ||| ||||||| |||| || || || | ||| | ||| |||||||| || | | Sbjct 9535 CGGCGTAATCGCAATGCATGCCTTCATCACGGGAAATCAATTCATTGGAAAAAGTCAACC 9476 Query 33365 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGA 33424 ||||||||| || | || || | |||||| |||||| || | || |||||||| | Sbjct 9475 CGGGCATTAACCCTCTTTTCTTCAACCAAAAAATGGAACAAAAAGCCCCGGAAAAGAAAA 9416 Query 33425 TTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCC 33484 | ||||| || || |||||||| || | || || || ||| | | ||| |||| Sbjct 9415 TCCCTTCCACAGCGGCAAAGGCGATCAATCGTTCGGCAAAACTTGGGGAATCA---ATCC 9359 Query 33485 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 33544 | | | |||||||| ||||| || || | || | | || || || | ||| | Sbjct 9358 ATCTAAGCGCCCAATCCGCCTTTTTCTTGATGGCTGGAAAGTTCTCAATAGCCTGAAAAA 9299 Query 33545 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33604 | ||||||||| || || || ||||| || || ||||| || || |||| | Sbjct 9298 GGATGTTTTTTTCCTTTTCGTCCTTTACATAGGTGTCTATCAACAGGGAGTAGGTTTCGG 9239 Query 33605 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 33664 |||| ||||| || || ||||| |||||||| || | | ||||| | | || | Sbjct 9238 AATGGATGTTCTCCATCATTATCTGGAATCCGTAAAAGAACTTGGCCTCCGAATATTGGA 9179 Query 33665 CTTCTGT-ACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33723 |||| | ||||||| | | |||||||||||||| || || || || || |||||| Sbjct 9178 CTTCGTTCACAAAATTCT-CGGCCAAATTTTCATTTACAATCCCATCGGATGCGGCAAAA 9120 Query 33724 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA---TTCCAATCA 33780 || ||||| | |||||||||||| || |||||| ||| |||| ||||| ||| Sbjct 9119 AAGGCCAAGATATGTTTTATAAAGTAACGTTCGTCGTCACTTAATTTATCGTTCCAGTCA 9060 Query 33781 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 33840 | ||| | | || ||| | || || | |||||||| | ||||| ||||| Sbjct 9059 GATAAATCCTGATGTAAATCAATCTCCTCGGCGGTCCAAAAACAGGCCTCACATTTTTTG 9000 Query 33841 TACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTAT 33889 ||| | ||| | || | || || || ||||| || |||||||||| Sbjct 8999 TACCATTCCCACAAATCGTGATGTTCAATGGGGAATATTACAAATCTAT 8951 >seq83140 Length=1468 Score = 113 bits (124), Expect = 6e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| || || | ||| |||||||||| ||| |||||||| |||||||||||| |||| Sbjct 1223 CCAGGGCACTCGTTCGGGCACATCAACGTCCAGTCTCCGTCCTCCTTCACTCGTCTCATG 1282 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 || || ||||||||||| ||| | | || ||||| || | ||| || ||||| || || Sbjct 1283 AACAGGTCAGGAATCCAGAGACCGAAGAAGAGATCCCTCGCTCTGTGCTCCTCCTTGCCG 1342 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| | ||| ||||| | | | || || ||||| || |||| ||| ||| Sbjct 1343 TGGTTCTTCCGCAAATCCAGGAAGTCAAGGAGGTCTGAGTGCCAGGGCTCCAGGTAGATG 1402 Query 63348 GC 63349 || Sbjct 1403 GC 1404 >seq59511 Length=2170 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 ||| |||||| ||||||| ||| |||||||||||||| | ||| || || |||||||| Sbjct 1461 ACAGCAAACAGCCGAAATCCGCA-TGCAGACCCTCGTCGCGACTGATCAGCTCGTTGGAG 1519 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCA 33392 ||||| || |||||||| || || | ||| || ||||| Sbjct 1520 AACGTCAGACCGGGCATCAGACCTCTCTTCTTCAGCCA 1557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621804948440400