Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_007809.1 Length=59446 Score E Sequences producing significant alignments: (Bits) Value seq18646 138 4e-28 seq5209 120 1e-22 >seq18646 Length=3619 Score = 138 bits (152), Expect = 4e-28 Identities = 170/228 (75%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 35564 CCCTCACCTTCGAGGGCTGGACCTACCGCGAAGTGG-ACGCCCGGGCGCTGTGGGACGCG 35622 |||| ||||||| ||| | ||||| | || | || | || |||||||||||||||| Sbjct 1025 CCCTGACCTTCGCCGGCCAGCCCTACGG-GACGCGGCAGGCGCGGGCGCTGTGGGACGGC 1083 Query 35623 ATCATGCGCGGGACCTGGGATTGGGCGGAGCCGGGCGTGCTGTTCATCGACGCGATCAAC 35682 |||||||| | ||||| || |||||||| ||| | || |||||| ||||||| Sbjct 1084 ATCATGCGTGCGACCTACGAGACCAGCGAGCCGGGTGTGATCTTTATCGACAGGATCAAC 1143 Query 35683 CGCATGAACAACCTCTGG--TACTGCGAGACCATCGCCGCCACGAACCCCTGCGGTGAGC 35740 || |||| || |||| |||||||| |||| |||||||||||| ||||| |||| Sbjct 1144 CGGCTGAAT--CCCCTGGCCTACTGCGAAGACATCCGCGCCACGAACCCTTGCGGAGAGC 1201 Query 35741 AACCGCTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCTTCAACCTGG 35788 | ||||| ||||| ||||| ||||| || | ||||| | ||||||| Sbjct 1202 AGCCGCTGCCGCCTTACGGCGCCTGTCTGCTCGGCTCGCTGAACCTGG 1249 >seq5209 Length=31209 Score = 120 bits (132), Expect = 1e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 35610 GCTGTGGGACGCGATCATGCGCGGGACCTGGGATTGGGCGGAGCCGGGCGTGCTGTTCAT 35669 ||| ||||||| ||||||| || ||| | || |||||||||||| | ||||| Sbjct 10091 GCTCTGGGACGGCATCATGCACGCCACCCACGCCGCTGCCGAGCCGGGCGTGATCTTCAT 10150 Query 35670 CGACGCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACGAACCC 35729 |||| ||||| | |||||||| ||||||||||||||| |||||| ||||| Sbjct 10151 CGACCGCATCAATCAGCGCAACAACCTGCACTACTGCGAGACCATCAGCGCCACCAACCC 10210 Query 35730 CTGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCTTCAACCTGG 35788 ||| || || || ||||| |||||||| || |||||| || ||||||| |||| |||| Sbjct 10211 CTGTGGCGAACAGCCGCTGCCGCCCTATGGCGCCTGCCTGCTGGGCTCGATCAATCTGG 10269 Score = 84.2 bits (92), Expect = 8e-12 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 36159 CGAGGACGTGCGGGACGCCATCGCCAAATACGGCATCCGCAACTCCCACCTCACTTCCAT 36218 |||||| | || | | ||||||| |||||||||||||| ||| |||| ||| | Sbjct 10640 CGAGGAGATCCGCGCGGGCATCGCCCGCCACGGCATCCGCAACGCCCTGGTCACCTCCGT 10699 Query 36219 CGCCCCGACCGGGACCATCAGCCTGTGCGCCGACAACGTCAGCTCCGGGATTGAGCCGGT 36278 ||| |||||||| |||||| ||| |||| |||| || ||||||| | |||||||| Sbjct 10700 CGCGCCGACCGGCACCATCTCGCTGCTGGCCGGCAACATCTCCTCCGGGCTGGAGCCGGT 10759 Query 36279 GTTC 36282 |||| Sbjct 10760 GTTC 10763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189774446738240