Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq10895 259 6e-64 seq83140 116 5e-21 >seq10895 Length=16309 Score = 259 bits (286), Expect = 6e-64 Identities = 973/1518 (64%), Gaps = 45/1518 (3%) Strand=Plus/Minus Query 62560 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62619 |||||| | ||||| | |||||| || || | ||| || || ||||| | | |||| || Sbjct 11538 AATAAAGGTATCTGCCAGTCCTTGGACTCCCAAACCTATTGGCCTATGGCGCATATTGGA 11479 Query 62620 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 62679 |||| ||||| | || || ||||| |||| || | |||| || || || Sbjct 11478 ATTTTCCGCTTCCTTTACGGGGTAGTAATTCCTATCAATGACCCTATTAAGGTTCTTGGT 11419 Query 62680 AA---------TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTAT 62730 | | || |||| || ||||| | ||||||| || || | Sbjct 11418 CACCCGTTTTGTAACCTTGAACAATTCCTTGTG---------ATCAAATTTGCCCCCTTT 11368 Query 62731 TACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 62790 ||||||||| | || | ||| |||| |||||||| ||||| |||| | | Sbjct 11367 AACAAACATGGGAAGAGCTATAGAGGCCAAGTTACAAACCGCTACTTCATCGGGGGAGGT 11308 Query 62791 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 62850 ||||| | |||||| || |||||||| | | ||| || || || || | ||||| Sbjct 11307 ATATTCCAATATCTCGGTACAAAGATTGGAAGATCGGATAGTACCCAAGTTCTTCTGATT 11248 Query 62851 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 62910 || || || ||||||||||||||| || | || || || || |||||||| || Sbjct 11247 GCTTTTACGATTGGCCGCATCCTTATAAAGCATATAGGGCGTTCCCGTCTCAATCTGGGA 11188 Query 62911 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC-TC 62969 ||| | || || ||| | | | ||||||| | |||| | ||| || || Sbjct 11187 TTCCAATATTTTTTCCCATAAATCCCTGGCCTTTACCGT---TTTGCGACCCTTATCCTC 11131 Query 62970 TTTCGTATAGTGTA--TACAATCGTTCGAACTCGTCTCCCCAAACATTGTC--CAGTCCA 63025 | | ||| | | || | | ||| || || || | | ||| || ||| Sbjct 11130 TGCCTCATATTTCAAATATAGTTTTTCAAATTCCTCACTGTGAT--TTGAAAACAATCCT 11073 Query 63026 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63085 |||||||||| || ||||| || | ||| ||| | | ||| ||| || ||||| || Sbjct 11072 GGACATTCATTGGGGCACATTAAGGTCCAATCTTCATTGGCCTCCACGCGCTTCATGAAC 11013 Query 63086 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 63145 | ||| |||||||| | || || ||||| | || | ||| || ||||| Sbjct 11012 AAATCTGGAATCCACATGGCGTAGAACAGATCACGGGCACGCATTTCTTCCTTTCCGTGG 10953 Query 63146 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63205 ||||| || | || | || | | |||||| | |||||| || || | || ||||| Sbjct 10952 TTCTTCTTCAATTCCAAAAAGTCAAAAATATCCGCATGCCAAGGCTCTACATAAATGGCA 10893 Query 63206 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63265 | | ||| || || ||||| ||||| | ||| | || |||| |||| | || Sbjct 10892 AAACTTCCTTTTCGCTTCCCGCCTCCTTGATCAACGTAGCGTGCCGTGTCATTAAATACC 10833 Query 63266 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTG 63325 || | ||| || | |||||||||||| ||||||||||| || | ||||| ||| | Sbjct 10832 CTTAGCATAGGGACAATACCATTGGAAGTACCATTGGTACCGGCTATATATGATCCCGTA 10773 Query 63326 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63385 || |||| ||| ||| || || || |||||||| || || |||||| ||| Sbjct 10772 GCCCGAACATTGTGAATGGAAAGTCCGATTCCCCCCGCAGATTGGGAGATTTTCGCGGTC 10713 Query 63386 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 63445 | || || || || || || || || ||||| || ||| ||||| | ||| || ||| Sbjct 10712 TGCTTCAAGGTGTCGTAAATACCATCGATACTGTCGTCCTTCATGGCCAATAGGAAGCAG 10653 Query 63446 CTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGT 63501 ||||| || || || ||||| | || || | |||||| | || || || Sbjct 10652 GAGGACATCTG----CGGCTTGGGCGTTCCGGAGTTGAAGAGGGTAGGTGTTGCATGGGT 10597 Query 63502 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA-- 63559 || |||||| || | || | || || || || || ||||| |||| |||| | Sbjct 10596 GAAATATTTTTTTGACATCAGCTCATAGGTTTCTATGGCAGAGTCCATAT--CATTTAAG 10539 Query 63560 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 63619 || ||||| || || || ||||| ||||| ||||| || | ||| | ||||| ||| Sbjct 10538 TGGATTCCAACCGCAACGCGCATCAACATATGCTGGGGCCGTTCGGCTATCTTCCCGTTC 10479 Query 63620 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63679 | || | | |||||| ||||| || || || || || || | |||| ||| || Sbjct 10478 AGCTTAAGGAGATAGGATCGCTCCAAGGTCTTGAAGCCGAAGTAATCGTATCCAAAATCA 10419 Query 63680 CGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTA 63739 || | ||| || ||| ||| | ||||| ||| || || | || ||| | || | Sbjct 10418 CGATTGTATATGATAGTCGAATCCAGTTTTTCCGAATTTTCGGAAATTACCT-TATAGAC 10360 Query 63740 AT-ACTTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATC 63798 | | |||| || || | ||| || || | ||||| | ||| | | | ||||| Sbjct 10359 CTCATCGGAAAGAAGCGGGGCTTTTTTACCCGTTCTGGGATTTATATACTCGTACAAATC 10300 Query 63799 CTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCT 63858 || ||| || ||| |||||| || | || |||| ||| || |||| || | Sbjct 10299 CTTCATGGTCTCGGAAAAGGATTTTTTGGTATTCTTATGTAAATTGGAAACGGAAATACG 10240 Query 63859 AGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGC 63918 |||||| | | |||||||||||||| || || || || || ||||| || Sbjct 10239 AGCGGCCAATTTTGCATAATCCGGATGCGTAGTGGTCATGGTAGCAGCCTGCTCGGCGGC 10180 Query 63919 CAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGC 63978 || | ||||||| || || || ||||||| ||| | ||| | || ||| |||||| Sbjct 10179 CAAATTGTCCAACTCCGAAGTGGTAACACCATCATAAAGTCCCTCTATTACCCGCATAGC 10120 Query 63979 TATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGA 64038 | ||| || || |||| | || ||| | ||||||||||| |||||| | | | Sbjct 10119 CACTTTTATGGGGTCTACCAGTTC---GTTGAGGCCATAACATAGTTTTCTGACCCTTGC 10063 Query 64039 TGTGATTTTATCAAACAT 64056 ||||| ||||| ||||| Sbjct 10062 CGTGATCTTATCGAACAT 10045 Score = 214 bits (236), Expect = 2e-50 Identities = 585/889 (66%), Gaps = 19/889 (2%) Strand=Plus/Minus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||||||||| || || | |||||| || ||||| ||||| || | || ||| || | Sbjct 9831 TTTTTGGTACTCGGAGACCCTTTTTTCAAAGAAATTGGTTTTCCCCTGTAGTGAAATCAT 9772 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 ||||| ||||| |||||||||||| |||||| | ||||| | || | |||| | Sbjct 9771 ATCCATAAAATCAAATGGATTGGTAGAATTATATACTTTTTCACATTGAAGTTCA---AC 9715 Query 32489 CAAT---CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 32545 |||| || || | |||||||| | |||| |||||| || ||||| || || Sbjct 9714 CAATAGCCTGTCCGTTACAAATTCCAAATATTGGGTCATCAGTTTTGCGTTCATCCCAAT 9655 Query 32546 AAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTAT 32605 || | || || || | | |||| ||| || |||| ||| | || | ||||| Sbjct 9654 GAGGCTTACAGGTAGGGATTCCGTAATAAACTCGCGTTCTATATCCAAGGCATTTGTTAG 9595 Query 32606 AATAGATCTTACTGTTTCTT----CACTCGGTGGATACAATAAATGTTTAAACATCAAAC 32661 ||| | | | | || | ||| || || ||| || || || | Sbjct 9594 AATCTGTGTAATCCTCTCCTTGGGCACCTTGTTGAC-CAAGTGGTGGTTGTGCAAATGAA 9536 Query 32662 ATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 32721 ||| ||||||| || | || || || | ||| ||||| |||||||| || | | Sbjct 9535 CGGCGTAATCGCAATGCATGCCTTCATCACGGGAAATCAATTCATTGGAAAAAGTCAACC 9476 Query 32722 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAA 32781 ||||||||| || | || || | |||||| ||||| ||| | || |||||||||| Sbjct 9475 CGGGCATTAACCCTCTTTTCTTCAACCAAAAAATGGAACAAAAAGCCCCGGAAAAGAAAA 9416 Query 32782 TTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCC 32841 | ||||| || || |||||||| || | || || || ||| | | ||| |||| Sbjct 9415 TCCCTTCCACAGCGGCAAAGGCGATCAATCGTTCGGCAAAACTTGGGGAATCA---ATCC 9359 Query 32842 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 32901 | | | |||||||| ||||| || || | || | |||| ||||| | ||| | Sbjct 9358 ATCTAAGCGCCCAATCCGCCTTTTTCTTGATGGCTGGAAAGTTCTCAATAGCCTGAAAAA 9299 Query 32902 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 32961 | ||||||||| || || || ||||| || || ||||| || || |||| | Sbjct 9298 GGATGTTTTTTTCCTTTTCGTCCTTTACATAGGTGTCTATCAACAGGGAGTAGGTTTCGG 9239 Query 32962 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTA 33021 |||| ||||| || || || || |||||||| ||| | | ||||| | | || | Sbjct 9238 AATGGATGTTCTCCATCATTATCTGGAATCCGTAAAAGAACTTGGCCTCCGAATATTGGA 9179 Query 33022 CTTCTGT-ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33080 |||| | ||||||| | | || ||||||||||| || || || || || |||||| Sbjct 9178 CTTCGTTCACAAAATTCT-CGGCCAAATTTTCATTTACAATCCCATCGGATGCGGCAAAA 9120 Query 33081 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA---TTCCAATCA 33137 || ||||| | |||||||||||| || |||||| ||| |||| ||||| ||| Sbjct 9119 AAGGCCAAGATATGTTTTATAAAGTAACGTTCGTCGTCACTTAATTTATCGTTCCAGTCA 9060 Query 33138 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 33197 | ||| | | || ||| | || || | |||||||| | ||||| ||||| Sbjct 9059 GATAAATCCTGATGTAAATCAATCTCCTCGGCGGTCCAAAAACAGGCCTCACATTTTTTG 9000 Query 33198 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 33246 ||| | ||| | || |||| || ||| || || || |||||||||| Sbjct 8999 TACCATTCCCACAAATCGTGATGTTCAATGGGGAATATTACAAATCTAT 8951 >seq83140 Length=1468 Score = 116 bits (128), Expect = 5e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTC-CAGTCCAGGACATTCATCCGGACACATCAACGA 63051 || ||||| || ||||| |||| ||| ||||| || || | ||| |||||||||| Sbjct 1193 TCAAACTCCTCCCCCCAG-CATTCAGACAGCCCAGGGCACTCGTTCGGGCACATCAACGT 1251 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| |||||||| |||||||||||| |||| || || ||||||||||| ||| | | || Sbjct 1252 CCAGTCTCCGTCCTCCTTCACTCGTCTCATGAACAGGTCAGGAATCCAGAGACCGAAGAA 1311 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 ||||| || | ||| || ||||| || || ||||| | ||| ||||| | | Sbjct 1312 GAGATCCCTCGCTCTGTGCTCCTCCTTGCCGTGGTTCTTCCGCAAATCCAGGAAGTCAAG 1371 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 | || || ||||| || |||| ||| ||||| Sbjct 1372 GAGGTCTGAGTGCCAGGGCTCCAGGTAGATGGC 1404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632470156524000