Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq13327 448 5e-121 seq303 435 3e-117 seq11659 102 9e-17 >seq13327 Length=3816 Score = 448 bits (496), Expect = 5e-121 Identities = 671/950 (71%), Gaps = 2/950 (0%) Strand=Plus/Minus Query 166083 CCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACCAT 166142 |||||| ||| | || |||||||| | | ||| | ||||| | || |||| || Sbjct 2796 CCGTCTATATATCGGATGGTTTGGATTATTAATGGTGCCAACGTTATTATTAGCAGT-AT 2738 Query 166143 C-TGTTTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGAGC 166201 | |||||||| | ||||| ||||| ||||| || || ||||| ||||| || ||||||| Sbjct 2737 CGTGTTTCATTGCTGCTTTTGTAGCCGCACCGCCAGTAGATATTGATGGAATTCGTGAGC 2678 Query 166202 CCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTCCT 166261 | || |||||||||| | || || || || || ||||| || || || || || | Sbjct 2677 CAGTTTCAGGCTCTCTTCTATACGGAAATAATATTATCTCAGGAGCCGTAGTACCGAGTT 2618 Query 166262 CCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGGC 166321 | || || |||||| | || || ||| | | || || || | |||| ||||| Sbjct 2617 CAAATGCTATTGGTATGCATTTGTATACGGTGTGAGATGCGATGTGTATTGAGGAATGAT 2558 Query 166322 TTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCCT 166381 | |||||||| || |||| ||| |||| || | || ||| | ||||| | | | Sbjct 2557 TGTATAACGGAGGACCTTACCAATTCGTTGTACTACATTTCTTAATCGGGGTAGCATCAT 2498 Query 166382 ACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAG 166441 | | |||||||| || ||||| |||||| | || ||||||||||| |||| ||||| Sbjct 2497 ATCTTGGTCGTGAGTGAGAATTAAGTTACCGTTTAGGAATGCGTCCTTGAATTTTCGTAG 2438 Query 166442 CATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAG 166501 | | ||||||||| |||||||||||||| || || || || || || || |||| |||| Sbjct 2437 CTTTCTCTGCACCAGTTGCAGCAGCATCGGCTGTATTTCTAGTTTACCCAATCGGACAAG 2378 Query 166502 GTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCT 166561 | ||||| || || | |||||| || || || ||| || ||||||| |||||| || | Sbjct 2377 GATCTTTTTCAGATGGAATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGCTAGTAT 2318 Query 166562 TCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTAT 166621 |||| |||||||| || ||| | |||||||| ||||| ||| || || ||||| |||| Sbjct 2317 TCCAGGCAGAGCATAATATCTTAATGCACCCTTTCCACATGGCTGGAGTGGCAGGAGTAT 2258 Query 166622 TCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCGTG 166681 | || || || | || || ||||| || | | ||||| || | | | | Sbjct 2257 TTGGAGGATCTTTATTTAGTGCTATGCATGGATCTTTAGTTACATCAACTTTAATTTCTA 2198 Query 166682 AGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCT 166741 ||| | |||| ||| || | || ||||| || || || || || ||| | || || | Sbjct 2197 TGACTAGTGAAGATGAATCACCTAATTATGGGTATAAATTCGGACAGGAATATGAAACAT 2138 Query 166742 ACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCA 166801 | || ||||| || || || || |||||||| || || ||||| |||| ||| || | Sbjct 2137 ATAATATCGTAGCCGCGCACGGATACTTCGGGCGTCTAATCTTTCAATTCGCAAGTTTTA 2078 Query 166802 ACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTA 166861 | ||||| || || | ||||||||||| ||| || || || || || ||||| || | Sbjct 2077 ATAACTCACGTTCTTTACACTTCTTCCTTGCAATTTGACCGGTAGTTGGAATCTGATTAA 2018 Query 166862 CTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCA 166921 | || | || |||| || ||||| ||||| || || || ||||| |||||||| || | Sbjct 2017 CAGCAATGGGAATTAGTACTATGGCTTTCAATCTAAATGGATTCAATTTCAACCAATCAA 1958 Query 166922 TCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTC 166981 |||| |||| | || ||||| | | ||| || ||| || | || ||||| || Sbjct 1957 TCATTGATGCAGAAGGACGTGTAATTTCGAGTTGAGCCGATATCTTAAATCGTGCAAATC 1898 Query 166982 TGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGAT 167031 | || |||||||||||||| |||||||| || ||||| |||||||| ||| Sbjct 1897 TAGGAATGGAAGTAATGCATGAGCGTAACGCGCACAATTTCCCTCTAGAT 1848 >seq303 Length=42796 Score = 435 bits (482), Expect = 3e-117 Identities = 692/983 (70%), Gaps = 12/983 (1%) Strand=Plus/Minus Query 167336 TTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGT 167395 ||| | ||||| ||||| || |||||| | |||||||| || |||||| |||| | || Sbjct 27674 TTTATATTTGTTGGCTGATCCGGATTATTGCTTTTTCCGACCGCTTATTTGGCGGTCGGA 27615 Query 167396 GGCTGGCTTACTGGCACGACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGT 167455 || || || || || || || || || || |||||| | || || | || ||||| Sbjct 27614 GGATGATTTGTGGGTACTACTTTCGTAACAAGTTGGTATTCTCATGGTCTAGCATCTAGC 27555 Query 167456 TACCTTGAGGGTGCTAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGT 167515 || || || ||| ||||||| | || || || || || || || ||| | ||||| Sbjct 27554 TATCTAGAAGGTTGTAATTTTTTAACTGCTGCTGTATCCACGCCGGCTAATTGCATGGGG 27495 Query 167516 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAG 167575 || || ||| | ||| ||| ||||| || ||||||| ||| | | |||| || Sbjct 27494 CACTCGCTTTTATTACCTTGAGGTCCCGAAGCTCAGGGACTTTTAACTCGATGGTATCAA 27435 Query 167576 CTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATG 167635 |||| || | || |||| | || | || || |||| | | ||||||| || Sbjct 27434 GTTGGAGGTTTATGAAATTTTATCGCCTTTCATGGGACCTTAGGGTTGGCAGGATTT-TG 27376 Query 167636 CTTCGG-CAATTTGAGATAAGTAGACTAGT--AGGTATCCGTCCTTACAATGCGATTGCT 167692 || | |||||||| || || |||| |||| ||||| || ||||| |||||| Sbjct 27375 TTTAAGACAATTTGAAATTGCAAGGTTAGTGCAGGTT--CGTCCATATAATGCAATTGCT 27318 Query 167693 TTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCC 167752 || | ||||| ||||| || ||||| ||||| ||| | || |||||| | || || | Sbjct 27317 TTCACCGGTCCAATTGCAGTTTTTGTATCTGTCTTTTTAATTTATCCTTTAGGTCAAGCG 27258 Query 167753 AGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTA 167812 ||||| || |||||||| ||||| || || || || |||||||| |||||||| | Sbjct 27257 AGTTGATTTTTTGCACCAAGTTTTGGAGTGGCTGCCATTTTTAGATTTTTACTATTCTTT 27198 Query 167813 CAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTA 167872 || || || |||||||| || || || ||||||||||||||||| || || ||||| || Sbjct 27197 CAAGGGTTTCATAACTGAACACTGAATCCTTTCCATATGATGGGTGTCGCAGGTATTTTA 27138 Query 167873 GGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGAT 167932 || ||||| || | ||||| |||||||| | || ||| | ||||| | ||| ||||| Sbjct 27137 GGAGGTGCGTTATTGTCTGCCATCCATGGAGCGACTGTACAAAATACCTTATATAAAGAT 27078 Query 167933 GGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCC 167992 |||| | |||| || || ||| | || || ||| || |||||||| Sbjct 27077 GGTGTGTCGTATGACACCTTTCGTGCTTTTAGCCCAACGCAATTAGAAGAGACTTATTCA 27018 Query 167993 ATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGT 168052 ||||| || || || || || || ||||| |||||||| | ||||| || |||||| Sbjct 27017 ATGGTAACCGCAAATCGTTTTTGATCTCAGATTTTTGGAGTAGCTTTTTCTAACAAGCGT 26958 Query 168053 TGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGT 168112 ||||| || ||||||||| | ||||| || || | || | || || | || |||| Sbjct 26957 TGGTTACATTTCTTTATGTTATTCGTACCGGTAACTGGCTTATGAACTTCTGCTTTTGGG 26898 Query 168113 ATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTA-GAGC 168171 || | ||||| || | ||| | | || || || ||||||||||| | ||||| |||| Sbjct 26897 ATGGTTGGTCTGGCCTTAAATTTAAGGGCATACGATTTTGTGTCTCAAG-AGTTACGAGC 26839 Query 168172 AGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACT 168231 ||| || ||||| || || ||||| || ||||| ||||| || | || ||||||||| | Sbjct 26838 AGCCGAAGATCCTGAATTCGAAACGTTTTATACCAAAAATATATTGCTTAATGAAGGAAT 26779 Query 168232 CCGTGCCTGGATGGC--TCCAGTAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAA 168289 |||||| || ||||| | ||| |||||||| |||||||| || | |||||||| ||| Sbjct 26778 CCGTGCTTGAATGGCTATGCAG--GACCAACCTCATGAAAATTTCATTTTCCCAGAGGAA 26721 Query 168290 GTATTGCCAAGAGGCAACGCTCT 168312 || || || | || || ||||| Sbjct 26720 GTTTTACCTCGCGGAAATGCTCT 26698 >seq11659 Length=22639 Score = 102 bits (112), Expect = 9e-17 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 162268 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTGT 162327 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 16981 GTAGCTCAGCTGGATAGAGCATCTGCCTTCTAAGCAGACGGTCACAGGTTCGAATCCTGT 17040 Query 162328 C 162328 | Sbjct 17041 C 17041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566191909224000