Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq10895 129 5e-25 seq37644 109 5e-19 seq48996 100 2e-16 seq9473 96.9 3e-15 >seq10895 Length=16309 Score = 129 bits (142), Expect = 5e-25 Identities = 334/497 (67%), Gaps = 18/497 (4%) Strand=Plus/Minus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 ||||||| |||||||| || || ||| | |||| |||||| | |||||||||||| ||| Sbjct 12269 TTGTCCAAAGTAAATTTGATGGCATCCACGGCCGCCTTGGTTCTCAAATAGTACATCCCT 12210 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 ||||| |||||||||||||||| | | || || | |||||| | ||| ||| Sbjct 12209 GTTTTTAAACCGCTTTTCCAAGCATAAAAATGCATAGAGGTCAATTTGGAATAGTTGGCA 12150 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGC- 128957 | || ||| | ||| || ||||| || || ||||| || || || | | | || Sbjct 12149 TTTTCCATAAACAAATTCAACGATTGGCTCTGGTCAATGAAATACCCTCGCT-GACGGCT 12091 Query 128958 CATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTG 129017 |||| |||| | || ||||| | | ||||| |||||||| || | || || | Sbjct 12090 CATATCAATAATATCTTTCATACTGAGCTCCCAAACCGTTTTATACAATTC-CTTAATAC 12032 Query 129018 TTTTGGTATTTCT-TCAATGTTCTGCACGCTGCCGTT-GTTTGCAATAA-TTTTGTTTCG 129074 | | || | || | ||||||| ||| | | ||| || | ||| || | ||||| Sbjct 12031 TATCGGGAATTATATCAATGTGCTGAATGGAGCCATTGGCGCGCATCAACTCCTGTTT-- 11974 Query 129075 CATCTGTTCGTTGTACAAATTC--AGTTTGATCAAATCGTCGGTCAAG---TATTTGTTT 129129 | | ||| | | ||||||| ||||| | |||||| || |||| | || || Sbjct 11973 TAGGTTTTCAT--TCCAAATTCCGAGTTTTACCAAATCTTC---CAAGAGATGCTTATTC 11919 Query 129130 ATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCA 129189 | ||| ||| || || | ||| || | | ||||||||| |||| | |||||| Sbjct 11918 ACTACGATAAACTCCCCGGACAATACCCTTCTGGTATAAATGTTGGAGGTGTAGGGCTCA 11859 Query 129190 AACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAA 129249 || | || ||||| || | |||||| | || | |||||| |||||| ||| || | Sbjct 11858 AAACACTCGTTGTTCCCCAGTATTTGGGATGTAGACGCGGTAGGCATGGGAGCGACCAAC 11799 Query 129250 AGCGAGTTTCGCAAACC 129266 || ||||| |||| ||| Sbjct 11798 AGGGAGTTGCGCACACC 11782 >seq37644 Length=6317 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||| || |||||| | ||||| || ||||||||| | || || ||| | || Sbjct 4332 ATGCAGATTTACGTAAAAACTCTGACCGGGAAGACGGTCACTTTAGATGTTGAACCTTCC 4391 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || | | ||| |||||||||||||||| || || | || || ||||| Sbjct 4392 GACTCAATTGAAGCGGTGAAAGAAAAAATTCAAGACAAAGAAGGGACCCCGCCTGATCAG 4451 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || || ||||| || | |||||| || || ||||||| ||||| Sbjct 4452 CAGAGACTTATCTTCGCAGGCAAGCAACTTGAGGATGGGCGAACTCTCTCCGACTACAAT 4511 Query 22399 ATTCAAAAAGAATCCACC 22416 ||| | || ||||||||| Sbjct 4512 ATTGAGAAGGAATCCACC 4529 >seq48996 Length=1832 Score = 100 bits (110), Expect = 2e-16 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 ||||| || ||||| || || || ||| |||| || |||||||| || |||| || | Sbjct 406 TTTGTCAAGACTTTGACAGGAAAGACGATCACCCTGCAAGTGGAACCCGACGATTCCATC 465 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 || ||||| | ||||| ||||||||||| ||||| || ||||| || | || Sbjct 466 CCACATGTCAAAAATTTGATTCAGGACAAGGAGGGAATTCCCCCTGATCAGCAGAGACTG 525 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCA--CCGCACCGTCTCCGATTACAACATTCAAA 22405 || ||||| || ||| || | ||||| || | ||| | |||||||||||||| | Sbjct 526 ATCTTTGCTGGGAAAAAGCTTGAGGA-CATTATGTACC-TGGATGATTACAACATTCAGA 583 Query 22406 AAGAATCCACCATACATTTAGTTTTGCG 22433 || |||||| | ||||| |||||||| Sbjct 584 CGGAGTCCACCCTCCATTTGGTTTTGCG 611 >seq9473 Length=1265 Score = 96.9 bits (106), Expect = 3e-15 Identities = 124/170 (73%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || ||| | ||||| || ||| ||||||| || ||||| || Sbjct 1095 AAAATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACGATCACTCTCGATGTGGAGCCC 1154 Query 22276 ACCGA---TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | || || || | ||| |||| ||| || || ||||||||||| ||||| ||| Sbjct 1155 TCTGACTCTATCGAGAACG---TCAAGGCAAAGATCCAGGACAAGGAGGGGATTCCCCCC 1211 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCAC 22382 ||||| || ||||| || || ||||| || ||| | ||||| |||||| Sbjct 1212 GATCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCAC 1261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418977616839850