Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1398 221 2e-52 seq59511 98.7 2e-15 >seq1398 Length=10803 Score = 221 bits (244), Expect = 2e-52 Identities = 461/680 (68%), Gaps = 30/680 (4%) Strand=Plus/Minus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 || || || || || |||||||||||||| ||||| | |||||||| || | ||| Sbjct 5895 TCCCTCTCCGGAGGGTGGAAGATGAAGCTCGCCCTTGCGCGCGCCATGCTTATCAAGGCC 5836 Query 279762 GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTA 279821 ||| |||| |||| |||||||| ||||||||| |||| || |||||||| ||||| Sbjct 5835 GATATCCTCTTGCTCGATGAGCCTACCAACCACTTGGATGTCAAGAACGTAGCATGGCTC 5776 Query 279822 GTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGC 279881 | | || || | | |||||| || | || | || || ||||||||||| ||| Sbjct 5775 GAGAACTGGCTGTGCTCCCAGAAGAACGTGACAGCCATGATGGTGTCTCACGACTCCGGC 5716 Query 279882 TTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG--CA-AAATCTGAAGCTCTCC 279938 ||||| || || ||| || |||||| ||||| ||| || ||| ||||| | | Sbjct 5715 TTCCTCGACAAGGTCTGCACTCACATCATCCACTACGAGTCCAGAAAGCTGAAAACTTAC 5656 Query 279939 AAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCG--CCCTGAGGCGGCCGCCTACT 279996 ||| ||||||||| | ||| |||| ||| || ||||||||| |||||| Sbjct 5655 AAG------GGCAACCTGGCAGCTCTCGT--CAAGGCTGTCCCTGAGGCAAAGTCCTACT 5604 Query 279997 ATGACCTGAAGGAC---GCCACCGCC---------AAGTGGGAATTCCCTGAGCCAGGGT 280044 | || || | | | ||||||||| |||| | ||||||||||| || Sbjct 5603 ACGAGCTCACCGCCTCTGCCACCGCCTTCGTTCAGAAGTTCGGCTTCCCTGAGCCCGGTA 5544 Query 280045 TTCTGGAGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTG 280104 | || || || ||| | ||||| || || | ||| | | || || ||||| Sbjct 5543 TCCTCGACGGTGTCAAGACCAAGGACAAGGCCATTCTCAAGATGCACGGTGTGTCCTTCA 5484 Query 280105 CTTATCCCAATGGCCCCAAC---ATCTTCAGCAGTGTCAACTC-GCAGGTTTCTATGAAC 280160 | || ||||| | |||| ||| ||| | | ||| ||| | || || | | Sbjct 5483 CCTACCCCAACACCACCAAGCAGATCCTCAACGGGGTCT-CTCTGTTCGTCTCCCTCGCC 5425 Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || | | ||| |||| || || || || || ||||| || || ||||| ||| Sbjct 5424 TCCCGTGTGGCCGTCGTTGGCCCTAACGGAGCTGGAAAGTCCACTCTCATCAAGTGCCTC 5365 Query 280221 ACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCT 280280 ||||| |||| || |||| || ||| ||||| || |||||| | || || || Sbjct 5364 ACTGGTGAGATGGAGCCCACCTCCGGAAACGTGTGGAAACACCCCAACCTCCGTATTGCC 5305 Query 280281 TACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAA 280340 ||||| || |||||||| ||||||||||||||||||||||| ||| ||||||| | || Sbjct 5304 TACGTTGCCCAGCACGCCTTCCACCACATCGAGAACCACCTCGACTGGACTCCTGCCGAA 5245 Query 280341 TACATTCAGTGGCGCTATGC 280360 ||||| |||||||||||| Sbjct 5244 TACATCATGTGGCGCTATGC 5225 >seq59511 Length=2170 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/191 (74%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 251765 CCTCCTCCACAATTGCCTT-CAC-CTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTA 251822 |||||||| ||| || | | ||| || | ||| || || |||||||||||| ||||||| Sbjct 1404 CCTCCTCC-CAACTGACGTGCACTCTCT-CCACAGGCAATTTGTTCTCCAGCATTGAGTA 1461 Query 251823 CAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAG 251882 ||| | ||| || | ||||||||||||||||||||||| | ||||||||| | Sbjct 1462 CAGCAAACAGCCGAAATCCGCATGCAGACCCTCGTCGCGACTGATCAGCTCGTTGGAGAA 1521 Query 251883 ACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGA 251942 ||| || ||||||| || | ||| | |||||| ||||||| || || || || || Sbjct 1522 CGTCAGACCGGGCATCAGACCTCTCTTCTTCAGCCAGTAGATTGCACAGAAAGA-CCTGA 1580 Query 251943 GAACAG-CAGA 251952 |||| |||| Sbjct 1581 ACACAGACAGA 1591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1025905016066290