Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4620 185 2e-41 seq1398 185 2e-41 seq9473 122 2e-22 seq37644 120 6e-22 seq49863 98.7 2e-15 seq63366 93.3 8e-14 seq22757 89.7 9e-13 seq10171 89.7 9e-13 seq102667 87.8 3e-12 seq57105 87.8 3e-12 seq85753 86.0 1e-11 seq10172 86.0 1e-11 >seq4620 Length=65515 Score = 185 bits (204), Expect = 2e-41 Identities = 370/542 (68%), Gaps = 10/542 (2%) Strand=Plus/Plus Query 268258 CCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCC 268317 |||||| |||| |||||||| || || || |||||||| || || || | || || Sbjct 48967 CCACATGCCTTCCACATAGTCGCGGGCGTGACCCCAATCCCGTCGGGCATCGAGATTACC 49026 Query 268318 GAGGAACAGGCATTTCTGCTTGCCGAGCTTCA-CGCGTGCAAGACCGCGAGTGATTTTTC 268376 ||| | ||||| | ||| ||| | | |||| || | || || ||||| || | Sbjct 49027 GAGATAAAGGCAATCCTGGCGACCGTAATGGATCGCGGCCACGGCC-CGCGTGATCTTGC 49085 Query 268377 GGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACG 268436 |||||||||| ||||||||||| | ||||||||||| ||||||||||||||||| | | Sbjct 49086 GGGTCACGAAAGTCTCGCCACGGATTGGGCTCTCGTGATTGAAGAGGATGCCGTTTGAAG 49145 Query 268437 CGAACATGCCATATGCCTCACGGTAGTTCAC---GACCGTCCAGTATGCAAACATCTTTG 268493 | || ||||| || || || |||||||| ||| |||||| ||| ||| ||| | Sbjct 49146 CATGCAGCCCATAGGCTTCGCGATAGTTCACAGTGAC---CCAGTAAGCATACAGCTTGG 49202 Query 268494 CAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGA 268553 | | || || || || || |||| ||| ||||| || || || |||| | | Sbjct 49203 CGGCGGCATAGGGCGAGCGAGGATAGAAAGGCGTGGTCTCGGACTGCGGCGTTTCCTGAA 49262 Query 268554 CTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGC 268613 | ||||| |||| || || ||||| || || ||||| | | || || | || | Sbjct 49263 CCTTGCCGTAGAGTTCCGAAGTCGACGCCTGATAGAAGCGGGCCGACTTCTCCA-TCCCC 49321 Query 268614 AG-ATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATAC 268672 || || || || ||||||||||| || | || |||| |||| | | || || ||| Sbjct 49322 AGAATGCGTATCGCCTCGAGCAACCGCAACGTACCCAGAGCATCGGCATTGGCGGTGTAC 49381 Query 268673 TCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCC 268732 || | | ||||| |||||| |||||||| || || | ||||| || | ||||||| Sbjct 49382 TCGGCGGTTTCGAAACTCACCTGAACATGGCTTTGCGCAGCAAGGTTGTAGATCTCATCC 49441 Query 268733 GGTTTGACCTGCTGCACGATCTTCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGC 268792 |||| || ||||| | | ||||| || | ||||| | ||| ||| | ||| Sbjct 49442 GGTTGCGTCTCTTGCACTAGGCGGATCAGGTTGGTGGCATCGGTCATGTCGCCGAAATGC 49501 Query 268793 AA 268794 || Sbjct 49502 AA 49503 >seq1398 Length=10803 Score = 185 bits (204), Expect = 2e-41 Identities = 475/715 (66%), Gaps = 34/715 (5%) Strand=Plus/Plus Query 224956 CTCCAGGTCCTGGCCTGAGGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAG 225015 |||| ||||| || | |||||| |||||| |||||| | | || ||| ||| || Sbjct 5206 CTCCCTGTCCTCTCCGGTGGCATAGCGCCACATGATGTATTCGGCAGGAGTCCAGTCGAG 5265 Query 225016 GTGGTTCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATG 225075 ||||||||| || |||||||| || |||||||| ||||| || || || | |||||| || Sbjct 5266 GTGGTTCTCGATGTGGTGGAAGGCGTGCTGGGCAACGTAGGCAATACGGAGGTTGGGGTG 5325 Query 225076 CTTCCACACAGAGCCCCGA-GTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAG 225134 |||||||| | || || || || | ||| || |||||| ||||||||| || | Sbjct 5326 TTTCCACAC-GTTTCCGGAGGTGGGCTCCATCTCACCAGTGAGGCACTTGATGAGAGTGG 5384 Query 225135 TCTTGCCCGCACCATTGGGGCCAATCACGCCAATCCGGGATGACATTG---CAACCTGCG 225191 ||| || || || || ||||||| ||| | | ||||| | | | | | | | | Sbjct 5385 ACTTTCCAGCTCCGTTAGGGCCAACGACGGCCACACGGGAGGCGAGGGAGACGAACAGAG 5444 Query 225192 AGTTCACGTTGCTGAAGATCT--CAGGGCCAGTT-TGGTAAGCAAAGGCCACGCCACGCA 225248 || | ||| ||| ||||| || ||| |||| | |||| ||| || ||| Sbjct 5445 AGACCCCGT---TGAGGATCTGCTTGGTGGTGTTGGGGTAGGTGAAGGACACACCGTGCA 5501 Query 225249 GCTTCATGATGGCACGGTCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACT 225308 ||| | ||||| |||||||| | | ||| || |||| |||||||| ||||| Sbjct 5502 TCTTGAGAATGGCCTTGTCCTTGGTCTTGACACCGTCGAGGATACCGGGCTCAGGGAAGC 5561 Query 225309 CCCACTT------------GGTCACCGCGTCCTTCAGGTCGTAGTAAGATGCAGCCTC-G 225355 | |||| ||| | | | | | || |||||||| || ||||| | Sbjct 5562 CGAACTTCTGAACGAAGGCGGTGGCAGAGGCGGTGAGCTCGTAGTAGGACTTTGCCTCAG 5621 Query 225356 GGTC-GCTTTGCCACGAAAGCAGACAGGTTTCCGAGGTGCTTCGTGAGCTTGAGGTTCT- 225413 || | || ||| |||| ||| | |||||| || || | | |||| |||| Sbjct 5622 GGACAGCCTTG--ACGAGAGCTGCCAGGTTGCCCTTGTAAGTTTTCAGCT-----TTCTG 5674 Query 225414 -TCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGACACA 225472 |||||| || | || | ||| || ||| |||||||| |||||||| ||||| Sbjct 5675 GACTCGTAGTGGATGATGTGAGTGCAGACCTTGTCGAGGAAGCCGGAGTCGTGAGACACC 5734 Query 225473 ATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGATGAGCCATGCCACGTTGCTG 225532 || |||| | ||||||| || || || | ||||||||| ||||| || Sbjct 5735 ATCATGGCTGTCACGTTCTTCTGGGAGCACAGCCAGTTCTCGAGCCATGCTACGTTCTTG 5794 Query 225533 ACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGATGGCG 225592 || |||| |||||| ||||| || || || | ||||| || || | || || |||||| Sbjct 5795 ACATCCAAGTGGTTGGTAGGCTCATCGAGCAAGAGGATATCGGCCTTGATAAGCATGGCG 5854 Query 225593 CGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGATTGAAACAG 225647 |||| || | |||||||| ||||| || ||||| |||||| ||| | | ||| Sbjct 5855 CGCGCAAGGGCGAGCTTCATCTTCCACCCTCCGGAGAGGGAGGAGATGGGAGCAG 5909 >seq9473 Length=1265 Score = 122 bits (134), Expect = 2e-22 Identities = 132/174 (76%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 ||||||| | || || || | |||||| |||||||| || || | || || ||||| Sbjct 1265 GAGAGTG--CGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCGGGG 1208 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 ||||| || |||||||| || ||||||||||||||| |||||| | ||| | | || Sbjct 1207 GGAATCCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATAGAGTCAGAGGGCTCC 1148 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || | ||||| || ||||| ||||| ||||| ||||| ||||||||| || Sbjct 1147 ACATCGAGAGTGATCGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATTTTG 1094 >seq37644 Length=6317 Score = 120 bits (132), Expect = 6e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 68237 TCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAG 68296 ||| ||||| || | |||||| | || ||||| || || | || || || |||||||| Sbjct 4556 TCCACGAAGCCGAAGAACCAAGCGGAGGGTGGATTCCTTCTCAATATTGTAGTCGGAGAG 4497 Query 68297 TGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAAT 68356 || | |||||| || | ||||| || ||||| || ||||| || || || || || | Sbjct 4496 AGTTCGCCCATCCTCAAGTTGCTTGCCTGCGAAGATAAGTCTCTGCTGATCAGGCGGGGT 4437 Query 68357 GCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTC 68416 ||||| ||||||||||| ||| | || || || || || | ||| | | ||| || || Sbjct 4436 CCCTTCTTTGTCTTGAATTTTTTCTTTCACCGCTTCAATTGAGTCGGAAGGTTCAACATC 4377 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || |||| || || || || || || || ||| | ||||||||| Sbjct 4376 TAAAGTGACCGTCTTCCCGGTCAGAGTTTTTACGTAAATCTGCATT 4331 >seq49863 Length=10164 Score = 98.7 bits (108), Expect = 2e-15 Identities = 331/505 (66%), Gaps = 28/505 (6%) Strand=Plus/Plus Query 268211 CCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCG 268270 || || || || || | || ||||||||| | ||| || || ||||||| | || Sbjct 9674 CCTGTGGCGATGACCCAATCTTCTGGCTCATCTGCCTGTAGGATCATCCACATCA-TCCG 9732 Query 268271 -ACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCA 268329 ||||||||| || || |||||||| || ||||| |||| || || || | || Sbjct 9733 TACATAGTCCTTGGCGTGCCCCCAATCCCGTTTTGCATCCAGATTGCCCAGATATAG--- 9789 Query 268330 TTTCTGCTTGCCGAGCTTCACGCGTGCAAGAC----CGCGA-----GTGATTTTTCGGGT 268380 ||| | || | || | || |||| | || |||| || ||||||| || Sbjct 9790 TTTATCCT-GTAGACC--CA---GTGCTATACGTACCGCGGCTCTTGTAATTTTTCTCGT 9843 Query 268381 CACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAA 268440 || || || |||||||| | || || || || || | || |||||||| || || Sbjct 9844 TACAAAAGTTTCGCCACGAATCGGCGATTCATGATTAAATAAAATTCCGTTGCAGGCAAA 9903 Query 268441 CATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGC 268500 ||| ||||| || || | ||||| ||| |||| || ||| |||| ||||| || || Sbjct 9904 CATACCATAGGCTTCCCTATAGTTTACGGTAATCCAATAGGCATACATTTTTGCCACGGC 9963 Query 268501 GTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTT-TGAGGGATTTCTCGGACTTTGC 268559 || ||| ||| |||| || || || || ||| || || | || | || || | Sbjct 9964 ATAGGGACTACGAGGATAAAAAGGGGTGGTC-TCTGACTGGGGCACCTCCTGTACCTTTC 10022 Query 268560 CAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTT---TTCGAGACCGCAGA 268616 || | | ||||| || ||||| || |||| || || || ||| | ||| | | Sbjct 10023 CATATAATTCGGAAGTGGATGCCTGATAGA---TTCGAGTCTTGCCTTCCATACCTAAAA 10079 Query 268617 TTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCG 268676 ||||| ||| || || | || | || || | ||||||| ||| | ||||| |||| Sbjct 10080 GTCGGACTGCATCAAGAATCCGCAAGGTGCCAAGGCCATCCGCGTTTCCCGTATATTCCG 10139 Query 268677 GCATCTCGAATGACACCTGGACATG 268701 | | || || || ||||||||||| Sbjct 10140 GTGTTTCAAAAGAAACCTGGACATG 10164 >seq63366 Length=262 Score = 93.3 bits (102), Expect = 8e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 202 CGCCCTCCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 261 Query 84515 C 84515 | Sbjct 262 C 262 >seq22757 Length=1947 Score = 89.7 bits (98), Expect = 9e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 84469 AGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1947 AGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 1896 >seq10171 Length=257 Score = 89.7 bits (98), Expect = 9e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 84469 AGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 257 AGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 206 >seq102667 Length=1144 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 268595 GTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCA 268654 ||||| |||||||| |||||| | | ||| ||||| || | | |||||||| ||||| Sbjct 204 GTTGTCTTTTCGAGTCCGCAGGTCCTGATGGCCTCCAGGAGTCTCAGAGTTCCGATGCCG 145 Query 268655 TCCACGTCCGCTGTATACTCCGGCATCTCGAATGACACCTGGACATGG 268702 || ||||| | || ||||| ||||||||||| || |||| |||||| Sbjct 144 TCAACGTCTCCGGTGTACTCTGGCATCTCGAAGGAGACCTTCACATGG 97 >seq57105 Length=498 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || || || || ||||| || |||||||| |||||||| ||||| ||| ||| |||| | Sbjct 491 TGCTGATCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGGAG 432 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | | || || || | ||||| || || || || || ||||||||||| |||||| Sbjct 431 TCAGAAGGCTCCACATCAAGAGTGATAGTCTTCCCGGTCAGAGTCTTGACGAAAATCTGC 372 Query 68460 ATTATG 68465 ||| || Sbjct 371 ATTTTG 366 >seq85753 Length=2244 Score = 86.0 bits (94), Expect = 1e-11 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 50 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 1 >seq10172 Length=273 Score = 86.0 bits (94), Expect = 1e-11 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 224 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919932490126800