Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq83140 149 1e-30 seq23761 118 2e-21 seq21968 95.1 2e-14 seq21114 93.3 8e-14 >seq83140 Length=1468 Score = 149 bits (164), Expect = 1e-30 Identities = 318/470 (68%), Gaps = 4/470 (1%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | | ||||||| |||||| || ||||||||||| |||||||| Sbjct 973 CACCTCATCAGGGGATGTGTACTCGACAATTTCAGTGCAGAGGTTGGATGACTTGATGCA 1032 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 ||||||| ||| || |||||||| |||||| ||||| ||||| |||||| |||| Sbjct 1033 CCCCAGGTTCTGTTGGTTGGACTTTCTGTTGCACGCGTCTTTGTACAGCATGTAGGGGGT 1092 Query 244825 CCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCT 244884 |||||||| | |||| | || | || ||| || | ||| | || ||| | Sbjct 1093 ACCGGTCTCAATCTGGCTCTCCAGAATTTTGAACCACAGCCACTGGGCCCTCACGGTCTT 1152 Query 244885 GCGAGCCTTGCCC-TCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGA 244943 | || |||| ||| | ||| | ||| ||| ||||| |||||| Sbjct 1153 CCTTCCCCTGCCTGTCTTC-TCGAATTCCTCATACTTTCTCTCAAACTCCTCCCCCCAGC 1211 Query 244944 CCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGA 245003 || || || |||||| ||||||||| | |||| || ||| | ||||| | Sbjct 1212 ATTCAGACAGCCCAGGGCACTCGTTCGGGCACATCAACGTCCAGTCTCCGTCCTCCTTCA 1271 Query 245004 CCC-TCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 | | ||| |||||| ||||| || |||||||| | |||||| ||||| | || ||| Sbjct 1272 CTCGTCT-CATGAACAGGTCAGGAATCCAGAGACCGAAGAAGAGATCCCTCGCTCTGTGC 1330 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| ||| |||||||| || |||| ||||||| || ||| |||||||||| Sbjct 1331 TCCTCCTTGCCGTGGTTCTTCCGCAAATCCAGGAAGTCAAGGAGGTCTGAGTGCCAGGGC 1390 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 |||| ||||| |||| || ||| || ||| ||||| ||||| || Sbjct 1391 TCCAGGTAGATGGCGAAGGAGCCCTTGCGTTTGCCTCCTCCTTGGTCGAC 1440 Score = 93.3 bits (102), Expect = 8e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 244397 GCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTG 244456 || |||| ||||||||||||||||| | |||| | | | |||| ||| | Sbjct 346 GCAGCGTGATAGATGGTCTCGAAGATATCCCTGTTGAGCTTGGCAGCCTCCTCGCTCTCG 405 Query 244457 AAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGT 244516 | |||| | | |||||| | | | || || | ||||||||||||| ||| | ||| Sbjct 406 TACGGGAGTCGGAGCATCATCAGGGCATCCGCAAAGCCCTGCACGCCGAGGCCCACGGGC 465 Query 244517 CTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACC 244576 ||||||||| ||||||| | | ||||| ||||||||| |||| | ||||||||| Sbjct 466 CTGTGTCGCATGTTGGACCTCCGTGCTTCCTCCACGGGGTAGTAGTTTCTGTCGATCACT 525 Query 244577 TTGTTGAGGTT 244587 |||| ||||| Sbjct 526 CTGTTAAGGTT 536 >seq23761 Length=1799 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||| |||||||| || || |||||||| || ||||||||||| |||||||| | Sbjct 1407 TGGCTTTCTTCGCGGCTTCCGACGGCATCGTGCTGGAGAACCTGGCGGCCAGGTTCCTTC 1466 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 | ||||| ||| |||||| | ||||||||| |||||||| ||||| |||||| Sbjct 1467 AGGAGGTCCAGATGCCTGAGGCCAGGGCCTTCTACGGATTCCAGATCGCCATGGAGAACA 1526 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | |||||||| |||||| | || || || |||||||| ||| | | ||| | Sbjct 1527 TCCACTCTGAAGTGTACAGCCTGTTGATCGACCAGTACATCCAGGACGCAGAGGAGAAGA 1586 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA-TCAAGAAGAAGG 42651 |||| || |||| |||||| || || |||||| | ||||||||| Sbjct 1587 ACGGACTCTTCACGGCCATCTCCACAGTG-CCTGCAGTGCAGAAGAAGG 1634 >seq21968 Length=3447 Score = 95.1 bits (104), Expect = 2e-14 Identities = 128/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 244959 GGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGA 245018 |||||| ||||||| | ||||||||| || | |||||| | ||||| |||||| | Sbjct 3046 GGCACGCGTCCGGGCAAAAGAGACTCCAAACGTCCCCGTCCCTCACCCTTCTCATGAACA 2987 Query 245019 GGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCT-CTGCTCGTCCGAGCCAGTG 245077 ||||||| | |||||| || |||||| || | | ||| ||| || ||| || | Sbjct 2986 GGTCGGGAACCCAGAGACCCGTGAAGAGATCACGTGCCCTTCTG-TCCTCCACACCTGCA 2928 Query 245078 TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGAC 245133 ||||||| || ||||||||||| || | ||| |||||| || || ||||| || Sbjct 2927 TTCTTCCGAAGGTCCAAAAAGTCGAAAATCTCGGGGTGCCACGGTTCGATGTATAC 2872 >seq21114 Length=6667 Score = 93.3 bits (102), Expect = 8e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 244675 GAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAAT 244734 ||| | |||| ||||| ||| || ||||| ||||| || | |||| |||| || || Sbjct 581 GAGAGAGACGGAGGCCAAGTTACACACGGCGACCTCGTCGGGTGCGGTGAACTGCACGAT 522 Query 244735 CTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTT 244794 ||| ||||||||||| ||||| ||||||||||| || || || ||| ||| Sbjct 521 CTCCGTGCAGAGGTTGCTGCAGCAGATGGTGCCCAACCCCTTCTGGTTACTCTTCTGGTT 462 Query 244795 GCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCT 244854 || ||||||||| |||||||| |||| || ||||||| || | | || || Sbjct 461 ACATGCGTCCTTGAAGAGCATGTAGGGAGTGCCCGTCTCGATTTGAGAAAAGACAACCGC 402 Query 244855 GTTCCAGAGGTCCC 244868 ||||||| ||||| Sbjct 401 CTTCCAGACGTCCC 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942607636034400