Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq17110 212 2e-50 seq4625 187 7e-43 >seq17110 Length=4632 Score = 212 bits (234), Expect = 2e-50 Identities = 375/537 (70%), Gaps = 35/537 (7%) Strand=Plus/Minus Query 42653 CCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGTCTCG 42712 || || | || |||||||||||| ||| | | ||| ||| ||||| | |||| Sbjct 1828 CCGACGGTCATGGCGTTGACCAGGATGTTGCCGTTGTAGGCGGGGTCGAAGTTGACCTCG 1769 Query 42713 CCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGCCG 42772 ||| | | |||||| |||| ||||||||||||| | ||| ||| | |||||| Sbjct 1768 CCGGCCACTGTCGGCACGCCGACGCAGTTGCCGTAGCCCCCGATCCCGGCGACCACGCCG 1709 Query 42773 TGCACGACCCGC-GCCGTGTC--GGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCATG 42829 ||||| | | || ||| ||| | || | |||||||||||||||||||| | | Sbjct 1708 G---CGACCAGATGGCGGGTCTTGGGATGCTCCGGCGCGCCGAAGCGCAGGGCGTTGAGG 1652 Query 42830 ACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTC 42889 | ||||| || |||||||||| || || |||||| | ||||||||| ||||| || Sbjct 1651 TTCATCACCGGCCGCGCGCCCATGGTGAAGACGTCGCGCAGGATGCCGCCGACACCGGTG 1592 Query 42890 GCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTG 42949 ||||| |||||| ||||||||||||| |||||||||||| ||||| |||||| | Sbjct 1591 GCCGCACCCTGGTAGGGCTCGATGAAGCTGGGGTGGTTGTGGCTCTCGATCTTGAA---G 1535 Query 42950 AC--CGCCCATCCC-TCGCCGACGTCGATGACGCCCGCGTTCT-GCCCCATCCC--GACC 43003 || || ||| ||| ||||| | ||||| ||||| ||||| | |||| |||| || | Sbjct 1534 ACGGCGGCCAGCCCGTCGCCCAGGTCGACCACGCCGGCGTTTTCGCCCGGTCCCTGGATC 1475 Query 43004 ATGAGGCGCTCGCGCATCTCGTCCGAGACCTTCTGCCCGAACCTCTTGAGGTAGAGCTTG 43063 | || | || |||| || || | |||| || || | ||| Sbjct 1474 A------CCTGGGGCCCCTCG---------GTCGGC---AGGGTCTTCAGCCAGCGTTTG 1433 Query 43064 CTCGACTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACATCGCCAGCTCGCCCGAG 43123 || |||||||||||||||||||||||||| || ||| | ||| | ||||| | | || Sbjct 1432 GAGGATTTGTAGGAGCAGTGCTCCGACCACATGACGGAGAAGATCCCGAGCTC-CACCAG 1374 Query 43124 GTGGGGCG-GCGGCCGAGGATCTCCTTGATCCTCGCGTACTCGTCGTCCTTGAGGCC 43179 || |||| |||||| | ||||||| || | || ||||||| ||| | |||| || Sbjct 1373 GTTCGGCGTGCGGCCCATGATCTCCAGGACCTTCTCGTACTCCTCGGCGCTGAGACC 1317 >seq4625 Length=19410 Score = 187 bits (206), Expect = 7e-43 Identities = 331/481 (69%), Gaps = 24/481 (5%) Strand=Plus/Plus Query 42641 TGCCGGAGC-ACGCCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATC 42699 |||||| || | ||| || | || |||||||||||| ||| | | ||| |||||| Sbjct 3104 TGCCGGGGCGATGCCGACGGTCATGGCGTTGACCAGGATGTTGCCGTTGTAGCGGGCATC 3163 Query 42700 GAA---CACGGTCTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGAT 42756 ||| ||| ||||||||| | | |||| |||| ||||||||||||| || ||| Sbjct 3164 GAAGTTCAC---CTCGCCGCCCACCGTGGGCACCCCGACGCAGTTGCCGTAGCCGCCGAT 3220 Query 42757 GCCGCTGGTGACGCCGTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCG 42816 |||| | ||| ||| || | | || | ||||| || | ||| ||||| || Sbjct 3221 GCCGGCGACGACCCCGGCCAGCAGATGGCGGGTTTTGGGGTGCTCCGGCGCACCGAAACG 3280 Query 42817 CAGGGCGTCCATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCC 42876 |||||| | || | ||||| || | |||||||||| || || ||||| | |||||| Sbjct 3281 CAGGGCATTCAGGTTGGCGACGGGCCTTGCGCCCATGGTGAAGACATCGCGCAGGATGCC 3340 Query 42877 GCCCACACCCGTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTC 42936 |||||| || || ||||||||||| ||||||||||||| |||||||||||| || || Sbjct 3341 GCCCACCCCGGTGGCCGCGCCCTGATAGGGCTCGATGAAGCTGGGGTGGTTGTGGCTTTC 3400 Query 42937 CGCCTTGAACGTGACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCAT 42996 | |||||| || | | | |||||||||| || | ||||| ||||||| || Sbjct 3401 CATCTTGAAGATGGCGGTCAGGCCCTCGCCGATATCCACCACGCCGGCGTTCTCGCC--- 3457 Query 42997 CCCGACCATGAGGCGCTCGCGCATCTCGTCCGAGACCTTCTGCCCG-AACCTCTTGAGGT 43055 | | || ||| | || | | |||| || | | | |||| || Sbjct 3458 CGGGCCCTTGATGACCT-------------GGGGGCCTTTTGTCGGCAGGGTCTTCAGCC 3504 Query 43056 AGAGCTTGCTCGACTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACATCGCCAGCT 43115 | |||| ||||||||||||||| |||||||||||||| |||||| | || |||| | Sbjct 3505 ATTTCTTGGACGACTTGTAGGAGCAATGCTCCGACCACATGACCGAGAAGATGCCCAGTT 3564 Query 43116 C 43116 | Sbjct 3565 C 3565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147988163110060