Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq9473 127 5e-24 seq37644 120 7e-22 seq57105 95.1 3e-14 seq118334 87.8 4e-12 seq4620 86.0 1e-11 >seq9473 Length=1265 Score = 127 bits (140), Expect = 5e-24 Identities = 134/175 (77%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| ||||| || | || ||||| ||||||||||||||||| ||| || || Sbjct 1265 GAGAGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGA---TCGGG 1209 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || || || || |||||||| || || || ||||| || ||||| || | || Sbjct 1208 GGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATAGAGTCAGAGGGCTC 1149 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || ||||| ||||||||||| ||||| |||||||| ||||| ||||||||| || Sbjct 1148 CACATCGAGAGTGATCGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATTTTG 1094 >seq37644 Length=6317 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288292 ATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGC 288351 ||||| ||||||| ||| || || || || || | ||| || ||||||||||| || | | Sbjct 4513 ATATTGTAGTCGGAGAGAGTTCGCCCATCCTCAAGTTGCTTGCCTGCGAAGATAAGTCTC 4454 Query 288352 TGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAA 288411 || ||| | ||| | |||||||| || || ||||| ||||||| ||| || || Sbjct 4453 TGCTGATCAGGCGGGGTCCCTTCTTTGTCTTGAATTTTTTCTTTCACCGCTTCAATTGAG 4394 Query 288412 TCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471 ||| | ||| || || | |||| |||||||||||||||||| || ||| | |||||| Sbjct 4393 TCGGAAGGTTCAACATCTAAAGTGACCGTCTTCCCGGTCAGAGTTTTTACGTAAATCTGC 4334 Query 288472 ATTATGTTATT 288482 ||| | || || Sbjct 4333 ATTCTCTTGTT 4323 >seq57105 Length=498 Score = 95.1 bits (104), Expect = 3e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| ||| | || ||||| || || ||||| || || || |||||||| || Sbjct 497 AGGCGCTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCA 438 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || || || | || || || || ||||| |||||||||||||||||||||||||| Sbjct 437 ATGGAGTCAGAAGGCTCCACATCAAGAGTGATAGTCTTCCCGGTCAGAGTCTTGACGAAA 378 Query 288466 ATCTGCATTATG 288477 ||||||||| || Sbjct 377 ATCTGCATTTTG 366 >seq118334 Length=438 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||| || || ||||| || ||||| ||||| ||||| || || ||| | || || Sbjct 438 GATTCCCTCCTTGTCCTGAATCTTCGCCTTCACATTTTCGATGGAGTCGGAAGGCTCGAC 379 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||||||||| || ||||| |||||||| Sbjct 378 ATCAAGAGTGATAGTCTTGCCGGTCAGAGTTTTCACGAAAATCTGCAT 331 >seq4620 Length=65515 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 72582 TTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGG-- 72639 |||||||||||||| || | | | ||| | |||||||| || || |||||| || Sbjct 49128 TTCAATCACGAGAGCCCAATCCGTGGCGAGACTTTCGTGACCCGCAAGATCACGCGGGCC 49069 Query 72640 -TGGTCGCGAATATTTTCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCC 72698 ||| ||||| || | ||| | | | ||| | |||||||||||| | |||||| Sbjct 49068 GTGGCCGCGATCCATTAC---GGTCGCCAGGATTGCCTTTATCTCGGTAATCTCGATGCC 49012 Query 72699 AAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAA 72758 | | |||||||| | || || || || |||| |||||||||||| |||| || Sbjct 49011 CGACGGGATTGGGGTCACGCCCGCGACTATGTGGAAGGCATGTGGTTGATGATGCAGCAG 48952 Query 72759 GATACTCCGGATGACTATGTGATTGCAACAGG 72790 || | || || |||||||| |||| || || Sbjct 48951 GAATCGCCCGACGACTATGTACTTGCGACGGG 48920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177437280105820