Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1398 143 6e-29 seq16721 91.5 3e-13 seq4620 86.0 1e-11 >seq1398 Length=10803 Score = 143 bits (158), Expect = 6e-29 Identities = 452/692 (65%), Gaps = 29/692 (4%) Strand=Plus/Plus Query 333319 TGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGAT 333378 |||| || |||| |||||| ||||| ||| || | | || ||| ||| || || | Sbjct 5211 TGTCCTCTCCGGTGGCATAGCGCCACATGATGTATTCGGCAGGAGTCCAGTCGAGGTGGT 5270 Query 333379 CCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCC 333438 ||||||||||||||| || ||||| || ||||| |||| ||| | || || || |||| Sbjct 5271 TCTCGATGTGGTGGAAGGCGTGCTGGGCAACGTAGGCAATACGGAGGTTGGGGTGTTTCC 5330 Query 333439 AAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTC 333498 | || ||||| ||||| ||||| | || ||||| ||| ||||||||| |||| Sbjct 5331 ACACGTTTCCGGAGGTGGGCTCCATCTCACCAGTGAGGCACTTGATGAGAGTGGACTTTC 5390 Query 333499 CCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATAC---CTGGGCATTCA 333555 | || || || ||| || || | | | |||| || || || | | | | Sbjct 5391 CAGCTCCGTTAGGGCCAACGACGGCCACACGGGAGGCGAGGGAGACGAACAGAGAGACCC 5450 Query 333556 CGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGTAGCTTCA 333615 ||||| | ||| | || || || || |||| ||||||| | | ||| | Sbjct 5451 CGTTG---AGGATCTGCTTGGTGGTGTTGGGGTAGGTGAAGGACACACCGTGCATCTTGA 5507 Query 333616 TGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG------GAACT 333669 ||||| |||||| | ||| ||| ||||||| |||||||| || ||||| Sbjct 5508 GAATGGCCTTGTCCTTGGTCTTGACACCGTCGAGGATACCGGGCTCAGGGAAGCCGAACT 5567 Query 333670 TC------CACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTC-GGGAC-G 333721 || | | ||| | |||| || ||||||| | || || ||||| | Sbjct 5568 TCTGAACGAAGGCGGTGGCAGAGGCGGTGAGCTCGTAGTAGGACTTTGCCTCAGGGACAG 5627 Query 333722 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 333781 | ||| |||| | | ||| || |||||||| | ||||||||| | | ||||| Sbjct 5628 C--CTTGACGAGAGCTGCCAGGTTGCCCTTGTAAGTTTTCAGCTTT---CTGGACTCGTA 5682 Query 333782 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 333841 ||||| || ||||| || ||||||||| ||||||||||| ||||| |||| | Sbjct 5683 GTGGATGATGTGAGTGCAGACCTTGTCGAGGAAGCCGGAGTCGTGAGACACCATCATGGC 5742 Query 333842 CGAAACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAGAA 333899 | |||| ||| || | ||| | ||| || ||||| ||||| ||| Sbjct 5743 TGTCACGTTCTTCTGGGAGCACAGCCAGTTC--TCGAGCCATGCTACGTTCTTGACATCC 5800 Query 333900 AGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA 333959 | |||||||| ||||| || || | || | | || || | ||||| || || ||| Sbjct 5801 AAGTGGTTGGTAGGCTCATCGAGCAAGAGGATATCGGCCTTGATAAGCATGGCGCGCGCA 5860 Query 333960 AGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 || ||||| ||||| ||||||||||| || || Sbjct 5861 AGGGCGAGCTTCATCTTCCACCCTCCGGAGAG 5892 >seq16721 Length=10663 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 59861 CCAGTTGCTTTTGAGGGTGCGTTGAAACTCAAAGAAATCTCGTATATTCACGCAGAGGGG 59920 |||||||| | ||||| || |||||| |||| || |||||||| |||||||||||||| Sbjct 3911 CCAGTTGCCCTCGAGGGGGCCTTGAAAATCAAGGAGATCTCGTACATTCACGCAGAGGGA 3970 Query 59921 TTCCTGGGAGGCGAGTTGAAACACGGTCCCCTCGC 59955 |||| ||| || | |||||| || || ||| |||| Sbjct 3971 TTCCCGGGGGGTGCGTTGAAGCATGGGCCCTTCGC 4005 >seq4620 Length=65515 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 68571 TTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGG-- 68628 |||||||||||||| || | | | ||| | |||||||| || || |||||| || Sbjct 49128 TTCAATCACGAGAGCCCAATCCGTGGCGAGACTTTCGTGACCCGCAAGATCACGCGGGCC 49069 Query 68629 -TGGTCGCGAATATTTTCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCC 68687 ||| ||||| || | ||| | | | ||| | |||||||||||| | |||||| Sbjct 49068 GTGGCCGCGATCCATTAC---GGTCGCCAGGATTGCCTTTATCTCGGTAATCTCGATGCC 49012 Query 68688 AAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAA 68747 | | |||||||| | || || || || |||| |||||||||||| |||| || Sbjct 49011 CGACGGGATTGGGGTCACGCCCGCGACTATGTGGAAGGCATGTGGTTGATGATGCAGCAG 48952 Query 68748 GATACTCCGGATGACTATGTGATTGCAACAGG 68779 || | || || |||||||| |||| || || Sbjct 48951 GAATCGCCCGACGACTATGTACTTGCGACGGG 48920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1100807174951500