Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq53971 224 5e-54 seq1485 188 3e-43 >seq53971 Length=16181 Score = 224 bits (248), Expect = 5e-54 Identities = 447/660 (68%), Gaps = 9/660 (1%) Strand=Plus/Plus Query 65949 GGCATCGGGGGGTATCCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGG 66008 |||||||| || ||| | |||||||| || ||||||||||| || || ||| || Sbjct 6830 GGCATCGGCGGCCTGCCGCGCGGCCGGGTCGTCGAGATCTACGGGCCGGAAAGTTCCGGC 6889 Query 66009 AAGTCAACGTTGTGCCTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCC 66068 || | || || || || | |||||| | || ||||| |||| || | | ||| Sbjct 6890 AAAACGACCCTGGCGCTGCATGTGGTGGCTGAGGCGCAGAAAACCGGCGGGACCTGTGCC 6949 Query 66069 TACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTC 66128 | |||||| ||||| ||| | | || || | ||||||||| ||||| || | ||| Sbjct 6950 TTCATCGATGCCGAGCATGCGATGGATCCGGTTTACGCCGCGAAACTCGGCGTCAACGTC 7009 Query 66129 GACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTT 66188 || | | ||||| ||||| || | |||||||||||||||||||||| |||| | Sbjct 7010 GAAGAATTGCTGGTTTCTCAGCCCGATGCCGGCGAGCAGGCCCTGGAGATCGCTGACACT 7069 Query 66189 CTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCG 66248 || || || |||| ||| | | | || || || || |||||||| |||||||| Sbjct 7070 CTGGTGCGCTCCGGCGCGGTCGACGTTCTGGTCGTCGATTCGGTGGCGGCTTTGGTGCCG 7129 Query 66249 CGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATG 66308 |||| ||||| ||||| ||||| || || |||| | ||| ||||| || ||||||||| Sbjct 7130 AGGGCCGAGCTGGAAGGTGACATGGGCGATTCGCTCCCCGGGCTGCAAGCGCGCCTGATG 7189 Query 66309 TCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGG 66368 |||||| |||||||| ||||| || |||| ||| | | || || | | Sbjct 7190 AGCCAGGCCCTGCGCAAGTTGACCAGCTCGATCTCCAAATCTCAGACTCTGGTAGTCTTC 7249 Query 66369 GTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACGGC---CCGAATGAGACCACC 66425 | || ||| | || ||||||||| ||| | |||| ||| |||||||| Sbjct 7250 ATCAACCAGATCCGTATGAAGATCGG---TGTGATGTTCGGCAATCCG---GAGACCACG 7303 Query 66426 ACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCC 66485 ||||| ||| | || ||| || || |||||||||| | ||| |||| | |||| Sbjct 7304 ACCGGCGGTCATGCGCTGAAGTTTTATTCCTCGGTGCGCCTCGATATCCGGCGCATCGGT 7363 Query 66486 ACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAAC 66545 | ||||| || || |||||||||| || || || ||||| || || ||| Sbjct 7364 GCGATTAAGGACAAGGACCTGGTGGTCGGCAACCAGACCCGGGTCAAGGTGGTGAAAAAC 7423 Query 66546 AAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCC 66605 ||| ||||||| ||| ||| | ||||| |||| ||| || ||||| || ||| Sbjct 7424 AAGATGGCGCCGCCGTTCCGGGTCGTGGAGTTCGACATCACCTATGGTGAGGGAATCTCC 7483 >seq1485 Length=10108 Score = 188 bits (208), Expect = 3e-43 Identities = 440/657 (67%), Gaps = 15/657 (2%) Strand=Plus/Plus Query 65910 ACCATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGG 65969 |||||| ||||||||||| | | |||| ||| ||||| ||||| || || | Sbjct 3096 ACCATTTCCACCGGCTCGCTGGGCTTGGATATCGCGCTCGGGATCGGCGGCGTCCCCCGC 3155 Query 65970 GGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCAC 66029 || || | || ||||||||||| || || || || || ||| | || || || ||| Sbjct 3156 GGGCGCATTGTCGAGATCTACGGCCCGGAATCCTCCGGAAAGACCACCCTGGCGCTGCAC 3215 Query 66030 GCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCT 66089 | ||| | || ||||| ||||| || | || || | | |||| || || ||| || Sbjct 3216 ATCGCCGCCGAGGCTCAGAAAGCCGGCGGAACGGCAGCTTTCGTCGATGCTGAGCATGCT 3275 Query 66090 CTCGACCCTGAG-TACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCA 66148 | ||||| ||| || || || ||| || || ||| ||||| | || || | || Sbjct 3276 TTGGACCC-GAGCTATGCGACGAAGCTGGGTGTCGATATCGACGAGCTGCTGATCAGCCA 3334 Query 66149 GCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGT 66208 ||| || | |||||||||||| ||||||| | ||| || || || |||| ||| Sbjct 3335 GCCGGATGCCGGCGAGCAGGCCTTGGAGATTGCCGACACGCTGGTGCGCTCCGGCGCGGT 3394 Query 66209 TTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGA 66268 | | | || | ||||| || ||||| || ||||||||||| || ||||| || || Sbjct 3395 CGACGTGCTGGTGATCGACTCCGTTGCGGCGCTCGTGCCGCGGGCCGAACTCGAGGGCGA 3454 Query 66269 CATCGGGGACTCGCACGTC-GGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGC 66327 || || || || | | | || ||||| || ||||||||| || || ||||||||| Sbjct 3455 GATGGGCGA-TCAGATGCCTGGACTGCAGGCGCGCCTGATGAGCCAAGCTCTGCGCAAGC 3513 Query 66328 TGACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGA 66387 ||||| | |||| ||| || |||| || | | | || ||| | || || Sbjct 3514 TGACCTCCTCGATCTCCAAGTCCCACACCCTTGTGATCTTCATCAACCAGATCCGTATGA 3573 Query 66388 AGATCGGCAACGTGGGCTACGG----CCCGAATGAGACCACCACCGGTGGTAAGGCTCTG 66443 |||||||| | || | ||| |||||| || ||| | || || || || || Sbjct 3574 AGATCGGCGTCATG---TTCGGGAGCCCCGAA----ACAACCTCTGGCGGCAACGCGTTG 3626 Query 66444 CGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGAT 66503 ||||| ||||||| ||| | ||| | || |||||| | ||||| ||||| Sbjct 3627 AAGTTCTATTCCTCGGTTCGTCTCGATATTCGGCGGATCGGTGCGATCAAGGACCGCGAT 3686 Query 66504 GAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCG 66560 | |||||||||| |||||||| || || ||||||||||||||||| || ||| Sbjct 3687 ACCGTCGTCGGCAACCAGACGCGCGTCAAAGTGGTCAAGAACAAGCTGGCTCCGCCG 3743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242036915207480