Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_012696.1 Length=73325 Score E Sequences producing significant alignments: (Bits) Value seq5209 181 5e-41 seq18646 138 5e-28 seq14782 84.2 1e-11 >seq5209 Length=31209 Score = 181 bits (200), Expect = 5e-41 Identities = 418/627 (67%), Gaps = 2/627 (0%) Strand=Plus/Plus Query 25118 CGGAATGTGACTCTCTTCAACTGCTACGTCATGGGAACTATCCCTGACAGCCTTGATGGT 25177 |||||||| || || |||||||||| ||||||||| | ||||||||| | | | || Sbjct 9645 CGGAATGTCACCCTTTTCAACTGCTTCGTCATGGGCAGCATCCCTGACGACATGGCCGGA 9704 Query 25178 ATCTTTGATATGCTCAAGGAAGCTGCACTCACCATGCAGCAAGGCGGTGGAATTGGTTAT 25237 ||||| || || |||||||| || ||||| ||||| || ||||| || || || || Sbjct 9705 ATCTTCGAACACCTGAAGGAAGCCGCTCTCACGATGCAACAGGGCGGCGGCATCGGCTAC 9764 Query 25238 GACTTCTCTACCCTTCGTCCCAAAGGTGCTCTTGTACGAGGCGTGGAGAGCTTCTCCAGC 25297 ||||| || ||||| || |||||||| || || || | || | | | || | || | Sbjct 9765 GACTTTTCCACCCTGCGGCCCAAAGGGGCCCTGGTCCACGGAATCG-GCGCCGATGCATC 9823 Query 25298 -GGTCCTCTCACCTTCATGGATGTCTGGGACTCCATGTGCAAAACTATCATGTCTGCTGG 25356 || || || ||||||||||||||||||| |||||||| || |||||| || || Sbjct 9824 CGGCCCGCTGTCCTTCATGGATGTCTGGGATGCCATGTGCCGGACCATCATGAGCGCCGG 9883 Query 25357 CTCACGACGTGGAGCTATGATGGCCACAATGCGTTGTGATCATCCTGACATCATGGACTT 25416 ||| || || || || ||||||||||| || || || ||||| |||||| | ||| Sbjct 9884 CTCGCGCCGCGGCGCCATGATGGCCACCCTGGCCTGCGACCATCCGGACATCGAAGTCTT 9943 Query 25417 TGTTACTGCCAAGCAAGATCCTCTGCGACTTCGGAACTTCAACGTGTCAGTTCTCTGTAC 25476 | |||||||| || || ||| ||| || ||||| | || || || | Sbjct 9944 CATCGAGGCCAAGCAGGAGCCGGGGCGGCTTTCGATGTTCAATCTTTCGGTGCTGGTCAG 10003 Query 25477 CGATGAGTTCATGGAAGCAGTTTCTGCTGACAGTGATTGGGATCTCGTATTTGATGGCAA 25536 ||| | |||||| | || || || ||| ||| ||| || || || | Sbjct 10004 CGACGCCTTCATGCAGGCGGTGCGTGAAGACCAGCCCTGGTCCCTCAGCTTCGAGGGTAC 10063 Query 25537 GGTCTATCAGACCATCAAAGCCAAAGAACTCTGGGATGCCATTCTGTGGAACACTTACAA 25596 ||| || || | | || | |||||||| | ||| || ||| || Sbjct 10064 GGTTTACAAGGTGGTACAGGCGCGCAAGCTCTGGGACGGCATCATGCACGCCACCCACGC 10123 Query 25597 CTACGCTGAACCCGGTGTAATCTTCATTGATCGCATCAACAAGGAAAACAACCTTTGGTT 25656 | || || || || || |||||||| || |||||||| || |||||||| | Sbjct 10124 CGCTGCCGAGCCGGGCGTGATCTTCATCGACCGCATCAATCAGCGCAACAACCTGCACTA 10183 Query 25657 TCTTGAAACCATTGCAGCAACGAATCCCTGTGGTGAGCAGCCTTTGCCTCCATATGGAGC 25716 || ||||| || || || |||||||| || ||||| |||| || ||||| || Sbjct 10184 CTGCGAGACCATCAGCGCCACCAACCCCTGTGGCGAACAGCCGCTGCCGCCCTATGGCGC 10243 Query 25717 TTGCCTTCTTGGTTCAGTCAATCTGGC 25743 ||||| || || || |||||||||| Sbjct 10244 CTGCCTGCTGGGCTCGATCAATCTGGC 10270 >seq18646 Length=3619 Score = 138 bits (152), Expect = 5e-28 Identities = 253/367 (69%), Gaps = 8/367 (2%) Strand=Plus/Plus Query 25046 CGCTTCTACAATGCCCTGTATGATTTCAAGTTCCTACGTGCTGGTAGGATCAACTCCGGT 25105 ||||||| | | ||| ||| || || |||||| | || || ||||||| | |||| Sbjct 553 CGCTTCTTCGAAGCCATGTCGGAACACAGGTTCCTTCCAGCGGGCAGGATCATCGCCGGC 612 Query 25106 GCAGGAACAGGCCGGAATGTGACTCTCTTCAACTGCTACGTCATGGGAACTATCCCTGAC 25165 || || || | || || || ||||||||||||| ||| ||||| || || ||| Sbjct 613 GCCGGGACGGAGCGCTCCGTCACGCTCTTCAACTGCTTCGTGATGGGCGAGATTCCCGAC 672 Query 25166 AGCCTTGATGGTATCTTTG---ATATGCTCAAGGAAGCTGCACTCACCATGCAGCAAGGC 25222 | | | |||||||| | || ||| ||| || || || ||| ||||||| ||| Sbjct 673 TCCATGGGCGGTATCTTCGCGCATCTGC---GGGAGGCGGCCCTGACCCTGCAGCAGGGC 729 Query 25223 GGTGGAATTGGTTATGACTTCTCTACCCTTCGTCCCAAAGGTGCTCTTGTACGAGGCGT- 25281 || || || ||||| |||||||| ||||| || || || || | || ||||| Sbjct 730 GGCGGCATCGGTTACGACTTCTCGACCCTGCGCCCGCGCGGAGCCGTCGTGAAGGGCGTC 789 Query 25282 GGAGAGCTTCTCCAGCGGTCCTCTCACCTTCATGGATGTCTGGGACTCCATGTGCAAAAC 25341 || | | | || ||||| |||| |||||||| || |||||| |||||||| || Sbjct 790 GGCGCGGAT-GCCTCGGGTCCGCTCAGTTTCATGGACGTTTGGGACGCCATGTGCCGGAC 848 Query 25342 TATCATGTCTGCTGGCTCACGACGTGGAGCTATGATGGCCACAATGCGTTGTGATCATCC 25401 |||||||| || ||| || || || || ||||||| ||| |||| || || ||||| Sbjct 849 CATCATGTCGGCGGGCCACCGGCGCGGCGCCATGATGGGCACCCTGCGCTGCGACCATCC 908 Query 25402 TGACATC 25408 || ||| Sbjct 909 CGATATC 915 >seq14782 Length=67077 Score = 84.2 bits (92), Expect = 1e-11 Identities = 79/97 (81%), Gaps = 4/97 (4%) Strand=Plus/Plus Query 72597 CGGAAGAGTGGCCGAGTCTGGCTGAAGACACTGGTCTTGAAAACCAGCAAACC-GAAAG- 72654 |||| | |||||||||| || ||||| ||| ||||||||||||| ||| | || || Sbjct 40705 CGGATGGGTGGCCGAGT--GGTTGAAGGCACCGGTCTTGAAAACCGGCAGGCGTGAGAGC 40762 Query 72655 GTTTCGTGGGTTCGAATCCCACCTCTTCCGCCATAAC 72691 || |||||||||||||||||||| | ||||||| ||| Sbjct 40763 GTCTCGTGGGTTCGAATCCCACCCCATCCGCCAGAAC 40799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 234095937389740