Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_012697.1 Length=74611 Score E Sequences producing significant alignments: (Bits) Value seq5209 196 2e-45 seq18646 165 4e-36 seq14782 91.5 7e-14 >seq5209 Length=31209 Score = 196 bits (216), Expect = 2e-45 Identities = 465/699 (67%), Gaps = 8/699 (1%) Strand=Plus/Plus Query 26443 TTCTACAATGCTCTGTATGATTTCAAGTTCCTACCTGCTGGTAGGATCAACTCCGGTGCT 26502 ||||| | |||||| ||||| ||| || || || || | ||| | | || || Sbjct 9576 TTCTATGACGCTCTGCGCGATTTTCGGTTTCTCCCCGCCGGACGCATCCAGGCTGGCGCC 9635 Query 26503 GGAACAGGCCGGAACGTGACTCTCTTCAACTGCTACGTCATGGGTACTATCCCTGACAGC 26562 || | | ||||| || || || |||||||||| ||||||||| | ||||||||| | Sbjct 9636 GGCAGCGAGCGGAATGTCACCCTTTTCAACTGCTTCGTCATGGGCAGCATCCCTGACGAC 9695 Query 26563 CTTGATGGTATCTTCGATATGCTCAAGGAAGCTGCACTTACCATGCAGCAAGGTGGTGGA 26622 | | || |||||||| || |||||||| || || || ||||| || || || || Sbjct 9696 ATGGCCGGAATCTTCGAACACCTGAAGGAAGCCGCTCTCACGATGCAACAGGGCGGCGGC 9755 Query 26623 ATCGGTTACGACTTCTCTACCCTTCGTCCCAAAGGTGCTCTTGTAAAGGGAGTGGAGAGC 26682 ||||| |||||||| || ||||| || |||||||| || || || | ||| | | | || Sbjct 9756 ATCGGCTACGACTTTTCCACCCTGCGGCCCAAAGGGGCCCTGGTCCACGGAATCG-GCGC 9814 Query 26683 TTCTCCAGC-GGTCCTCTCACCTTTATGGATGTCTGGGACTCCATGTGCAAAACCATTAT 26741 | || | || || || |||| |||||||||||||| |||||||| ||||| || Sbjct 9815 CGATGCATCCGGCCCGCTGTCCTTCATGGATGTCTGGGATGCCATGTGCCGGACCATCAT 9874 Query 26742 GTCTGCTGGCTCCCGTCGTGGAGCTATGATGGCCACCATGCGGTGTGATCATCCTGACAT 26801 | || ||||| || || || || |||||||||||| || || || ||||| ||||| Sbjct 9875 GAGCGCCGGCTCGCGCCGCGGCGCCATGATGGCCACCCTGGCCTGCGACCATCCGGACAT 9934 Query 26802 CATGGAGTTTGTCACAGCCAAACAGGATCCTCTGCGACTCCGTAACTTCAACGTCTCAGT 26861 | | || || ||||| ||||| || ||| || | ||||| | || || Sbjct 9935 CGAAGTCTTCATCGAGGCCAAGCAGGAGCCGGGGCGGCTTTCGATGTTCAATCTTTCGGT 9994 Query 26862 TCTCTGTACGGATGAGTTCATGGAAGCAGTGGCTGCTGACAGTGATTGGGATCTCATGTT 26921 || | || | |||||| | || ||| || ||| ||| |||| || Sbjct 9995 GCTGGTCAGCGACGCCTTCATGCAGGCGGTGCGTGAAGACCAGCCCTGGTCCCTCAGCTT 10054 Query 26922 CGATGGTAAGGTCTACCAGACCATCAAAGCCAAAGAACTCTGGGAAACCATTCTCTGGAA 26981 ||| |||| ||| ||| || | | || | |||||||| || || | | Sbjct 10055 CGAGGGTACGGTTTACAAGGTGGTACAGGCGCGCAAGCTCTGGGACGGCA---TCATGCA 10111 Query 26982 CACCTACAACTACGCT---GAACCCGGTGTGATCTTCATTGATCGCATCAACAAGGAAAA 27038 | || | || |||| || || || ||||||||||| || |||||||| || || Sbjct 10112 CGCCACCCACGCCGCTGCCGAGCCGGGCGTGATCTTCATCGACCGCATCAATCAGCGCAA 10171 Query 27039 CAATCTTTGGTTCCTTGAAACCATTGCAGCAACAAATCCATGTGGTGAGCAACCGCTCCC 27098 ||| || | | || ||||| || || || || ||||| || || ||||| || Sbjct 10172 CAACCTGCACTACTGCGAGACCATCAGCGCCACCAACCCCTGTGGCGAACAGCCGCTGCC 10231 Query 27099 TCCATATGGTGCATGTCTGCTCGGATCGGTGAATCTGGC 27137 || ||||| || || ||||| || ||| | |||||||| Sbjct 10232 GCCCTATGGCGCCTGCCTGCTGGGCTCGATCAATCTGGC 10270 Score = 86.0 bits (94), Expect = 3e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 28182 GCCTTTCGAGATCTTTATCAACTCCAAGAACGTGGAACACCATCAGTGGACTGCGGCTCT 28241 ||| ||||||||||| ||||| |||||||| |||| ||| || ||||| ||| || Sbjct 11357 GCCCTTCGAGATCTTCATCAATTCCAAGAATATGGAGCACTATGCCTGGACCCTGGCGCT 11416 Query 28242 TACGAGGATGATCTCGGCAGTCTTCCAACGAGGTGGAGATGTCCGATTCGTTGCTGAAGA 28301 ||| |||||||||| || ||||||| || || || || ||| || || | || || Sbjct 11417 GACGCGGATGATCTCTGCCGTCTTCCGGCGCGGCGGCGACGTCTCCTTTGTCGTCGAGGA 11476 Query 28302 ACTGAAG 28308 ||||||| Sbjct 11477 ACTGAAG 11483 >seq18646 Length=3619 Score = 165 bits (182), Expect = 4e-36 Identities = 259/367 (71%), Gaps = 8/367 (2%) Strand=Plus/Plus Query 26440 CGCTTCTACAATGCTCTGTATGATTTCAAGTTCCTACCTGCTGGTAGGATCAACTCCGGT 26499 ||||||| | | || ||| || || |||||| || || || ||||||| | |||| Sbjct 553 CGCTTCTTCGAAGCCATGTCGGAACACAGGTTCCTTCCAGCGGGCAGGATCATCGCCGGC 612 Query 26500 GCTGGAACAGGCCGGAACGTGACTCTCTTCAACTGCTACGTCATGGGTACTATCCCTGAC 26559 || || || | || ||| || ||||||||||||| ||| ||||| || || ||| Sbjct 613 GCCGGGACGGAGCGCTCCGTCACGCTCTTCAACTGCTTCGTGATGGGCGAGATTCCCGAC 672 Query 26560 AGCCTTGATGGTATCTTCG---ATATGCTCAAGGAAGCTGCACTTACCATGCAGCAAGGT 26616 | | | |||||||||| || ||| ||| || || || ||| ||||||| || Sbjct 673 TCCATGGGCGGTATCTTCGCGCATCTGC---GGGAGGCGGCCCTGACCCTGCAGCAGGGC 729 Query 26617 GGTGGAATCGGTTACGACTTCTCTACCCTTCGTCCCAAAGGTGCTCTTGTAAAGGGAGT- 26675 || || ||||||||||||||||| ||||| || || || || | || ||||| || Sbjct 730 GGCGGCATCGGTTACGACTTCTCGACCCTGCGCCCGCGCGGAGCCGTCGTGAAGGGCGTC 789 Query 26676 GGAGAGCTTCTCCAGCGGTCCTCTCACCTTTATGGATGTCTGGGACTCCATGTGCAAAAC 26735 || | | | || ||||| |||| || ||||| || |||||| |||||||| || Sbjct 790 GGCGCGGAT-GCCTCGGGTCCGCTCAGTTTCATGGACGTTTGGGACGCCATGTGCCGGAC 848 Query 26736 CATTATGTCTGCTGGCTCCCGTCGTGGAGCTATGATGGCCACCATGCGGTGTGATCATCC 26795 ||| ||||| || ||| ||| || || || ||||||| |||| |||| || || ||||| Sbjct 849 CATCATGTCGGCGGGCCACCGGCGCGGCGCCATGATGGGCACCCTGCGCTGCGACCATCC 908 Query 26796 TGACATC 26802 || ||| Sbjct 909 CGATATC 915 >seq14782 Length=67077 Score = 91.5 bits (100), Expect = 7e-14 Identities = 81/98 (83%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 73768 ACGGAAGAGTGGCCGAGTCTGGCTGAAGGCACTGGTCTTGAAAACCAGCAAACC-GAAAG 73826 ||||| | |||||||||| || ||||||||| ||||||||||||| ||| | || || Sbjct 40704 ACGGATGGGTGGCCGAGT--GGTTGAAGGCACCGGTCTTGAAAACCGGCAGGCGTGAGAG 40761 Query 73827 -GTTTCGTGGGTTCGAATCCCACCTCTTCCGCCATAAC 73863 || |||||||||||||||||||| | ||||||| ||| Sbjct 40762 CGTCTCGTGGGTTCGAATCCCACCCCATCCGCCAGAAC 40799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238203780299480