Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq13327 471 5e-128 seq303 387 2e-102 seq4451 104 3e-17 seq11659 86.0 8e-12 seq1150 86.0 8e-12 seq2674 84.2 3e-11 >seq13327 Length=3816 Score = 471 bits (522), Expect = 5e-128 Identities = 640/889 (72%), Gaps = 4/889 (0%) Strand=Plus/Plus Query 7544 TCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGG 7603 || |||||||| ||||| || |||||||| ||||| |||||||| || ||| ||||| Sbjct 1849 TCTAGAGGGAAATTGTGCGCGTTACGCTCATGCATTACTTCCATTCCTAGATTTGCACGA 1908 Query 7604 TTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTG 7663 || | | || || || | | ||||| |||| |||||||||| || |||||| Sbjct 1909 TTTAAGATATCGGCTCAACTCGAAATTACACGTCCTTCTGCATCAATGATTGATTGGTTG 1968 Query 7664 AAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATG 7723 || ||||| || || || ||||| ||||| || |||| || | || || || ||||| Sbjct 1969 AAATTGAATCCATTTAGATTGAAAGCCATAGTACTAATTCCCATTGCTGTTAATCAGATT 2028 Query 7724 CCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCG 7783 ||||| || || || ||| ||||||||||| | ||||| ||||| || || ||| Sbjct 2029 CCAACTACCGGTCAAATTGCAAGGAAGAAGTGTAAAGAACGTGAGTTATTAAAACTTGCG 2088 Query 7784 TATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCT 7843 |||| ||||| ||||| || ||||||||||| || || ||||| || || || || | | Sbjct 2089 AATTGAAAGATTAGACGCCCGAAGTATCCGTGCGCGGCTACGATATTATATGTTTCATAT 2148 Query 7844 TCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGA 7903 || || ||||| ||||| ||||| || | || ||| ||| | || | || | | Sbjct 2149 TCCTGTCCGAATTTATACCCATAATTAGGTGATTCATCTTCACTAGTCATAGAAATTAAA 2208 Query 7904 GAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCG 7963 | || || || | || |||||||| ||||| || | ||| || ||||| || || || Sbjct 2209 GTTGATGTAACTAAAGATCCATGCATAGCACTAAATAAAGATCCTCCAAATACTCCTGCC 2268 Query 7964 ACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATG 8023 || || ||||||||| |||||||| | ||| || |||||||| ||||| || |||||| Sbjct 2269 ACTCCAGCCATGTGGAAAGGGTGCATTAAGATATTATGCTCTGCCTGGAATACTAGCATG 2328 Query 8024 TAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAA 8083 ||||||| || ||||| || || |||||||| | || || ||||| ||||| |||| Sbjct 2329 AAGTTGAATGTTCCAGAAATTCCTAGAGGCATTCCATCTGAAAAAGATCCTTGTCCGATT 2388 Query 8084 GGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATC 8143 || || || || |||||||| |||||||| |||||||| |||||| | ||||| | || Sbjct 2389 GGGTAAACTAGAAATACAGCCGATGCTGCTGCAACTGGTGCAGAGAAAGCTACGAAAATT 2448 Query 8144 CAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAGATA 8203 || |||||||| |||| ||||||| | ||| ||||||||||| | |||| || | || Sbjct 2449 CAAGGACGCATTCCTAAACGGTAACTTAATTCTCACTCACGACCAAGATATG-AT-GCTA 2506 Query 8204 --CCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCAT 8261 ||||| | ||| || | | ||||| |||| |||| || ||||| || | || || | Sbjct 2507 CCCCGATTAAGAAATGTAGTACAACGAATTGGTAAGGTCCTCCGTTATACAATCATTCCT 2566 Query 8262 CAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAA 8321 ||| | | || || || | | ||| || || | ||||||||| || ||| || | Sbjct 2567 CAATACACATCGCATCTCACACCGTATACAAATGCATACCAATAGCATTTGAACTCGGTA 2626 Query 8322 CAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGA 8381 | || || || ||||| || || || || || | || || || | || || ||||| | Sbjct 2627 CTACGGCTCCTGAGATAATATTATTTCCGTATAGAAGAGAGCCTGAAACTGGCTCACGAA 2686 Query 8382 TGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAAACA 8430 | || ||||| || || || || || || || ||||| | |||||||| Sbjct 2687 TTCCATCAATATCTACTGGCGGTGCGGCTACAAAAGCAGCAATGAAACA 2735 >seq303 Length=42796 Score = 387 bits (428), Expect = 2e-102 Identities = 698/1015 (69%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 ||||| || || | || || ||||| || || || | || |||||||| ||||| ||| Sbjct 26698 AGAGCATTTCCGCGAGGTAAAACTTCCTCTGGGAAAATGAAATTTTCATGAGGTTGGTCC 26757 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 ||||| || ||||| | |||||||| | | || || |||||||| ||||| Sbjct 26758 TGCATAGCCATTCAAGCACGGATTCCTTCATTAAGCAATATATTTTTGGTATAAAACGTT 26817 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCT-AAG 6441 ||||| || ||||| || ||||||| | |||||| || ||||| || || || || || Sbjct 26818 TCGAATTCAGGATCTTCGGCTGCTCGTAACTCTTGAGACACAAAATCGTATGCCCTTAAA 26877 Query 6442 GTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAA 6501 ||||| || ||||||| || |||| ||| || || | || | || || || || Sbjct 26878 TTTAAG-GCCAGACCAACCATCCCAAAAGCAGAAGTTCATAAGCCAGTTACCGGTACGAA 26936 Query 6502 CAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCA 6561 | |||||||||||||| ||||||||| || || || | ||||| |||||||| || Sbjct 26937 TAACATAAAGAAATGTAACCAACGCTTGTTAGAAAAAGCTACTCCAAAAATCTGAGATCA 26996 Query 6562 GAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTT 6621 |||||||| || || ||||| ||||| ||||| ||| ||| || || ||| || Sbjct 26997 AAAACGATTTGCGGTTACCATTGAATAAGTCTCTTCTAATTGCGTTGGGCTAAAAGCACG 27056 Query 6622 GAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAAT 6681 || || | | ||||||||| | | || ||||| | |||||| || || || || Sbjct 27057 AAAGGTGTCATACGACACACCATCTTTATATAAGGTATTTTGTACAGTCGCTCCATGGAT 27116 Query 6682 AGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAG 6741 ||| | | || || || ||||| |||||||| |||||||||||||| || || || || Sbjct 27117 GGCAGACAATAACGCACCTCCTAAAATACCTGCGACACCCATCATATGGAAAGGATTCAG 27176 Query 6742 CGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAA 6801 || ||||| || || || || | ||| ||||| || | || || || || || ||||| Sbjct 27177 TGTTCAGTTATGAAACCCTTGAAAGAATAGTAAAAATCTAAAAATGGCAGCCACTCCAAA 27236 Query 6802 CGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAA 6861 || ||||| || ||||| | || || | |||||| || | ||||||||| ||||| Sbjct 27237 ACTTGGTGCAAAAAATCAACTCGCTTGACCTAAAGGATAAATTAAAAAGACAGATACAAA 27296 Query 6862 GACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGTGC 6921 || ||||| ||||| | || || |||||||| || ||||||| |||| | ||| Sbjct 27297 AACTGCAATTGGACCGGTGAAAGCAATTGCATTATATGGACGAACCTGCACTAACCTTGC 27356 Query 6922 GATCTCAAACTG-CCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAA 6980 || ||||| || | || || || ||| | | |||| || || | || | || Sbjct 27357 AATTTCAAATTGTCTTAAACA-AAATCCTGCCAACCCTAAGGTCCCATGAAAGGCGATAA 27415 Query 6981 AAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCC 7040 || |||| || |||| ||| ||| || ||| |||||||||||| ||||| | Sbjct 27416 AATTTCATAAACCTCCAACTTGATACCATCGAGTTAAAAGTCCCTGAGCTTCGGGACCTC 27475 Query 7041 ATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGA 7100 | | | | || || || || | | ||| || || |||||||||||||| | | Sbjct 27476 AAGGTAATAAAAGCGAGTGCCCCATGCAATTAGCCGGCGTGGATACAGCAGCAGTTAAAA 27535 Query 7101 AATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAG 7160 ||||||| || || ||||| ||| || | || |||| ||||| || || ||||||| Sbjct 27536 AATTACAACCTTCTAGATAGCTAGATGCTAGACCATGAGAATACCAACTTGTTACGAAAG 27595 Query 7161 TTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTG 7220 | || ||| | || || || | |||| ||||| || || || || | | || | Sbjct 27596 TAGTACCCACAAATCATCCTCCGACCGCCAAATAAGCGGTCGGAAAAAGCAATAATCCGG 27655 Query 7221 ACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 | || |||||||| | || || || |||| | | || || | || |||||| Sbjct 27656 ATCAGCCAACAAATATAAATCTTTCCTGCTTTATAAAATCGTCCAATAAATCAAA 27710 >seq4451 Length=5298 Score = 104 bits (114), Expect = 3e-17 Identities = 158/222 (71%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 ||||| |||| || || || || ||| |||||| ||| |||| ||||| ||||| Sbjct 2087 GTGGGGTAAGCCACGCATGTGAGGGTGAAGCCAGCACCGAGCTGGCTGTCATCGAGGAAG 2146 Query 10309 GATTGATC-GCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGC 10367 | || || | ||| || || | || |||| | ||||| || || | || |||| Sbjct 2147 GTCTGCTCAGAGTTG-TCAACAGATCCGGAGACAACCTTGCCGGCGCAGGTGGAGCAGGA 2205 Query 10368 ACCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTA 10427 ||||| ||||| || ||| ||||||||| || || || |||||||||||||||| ||| Sbjct 2206 GCCAGCGCGGCAGGAATAGGGGAGGTCAATTCCGGCCTCCTCAGCAGCATCCAGAACGTA 2265 Query 10428 CTGATCGTCAGCACACTCAAAAGTAGTTTCAGTTCCATCGGG 10469 ||| || ||| ||||| | | || | ||||||||||| Sbjct 2266 CTGGTCATCACTGCACTCGA---TGGTCTTGGTTCCATCGGG 2304 >seq11659 Length=22639 Score = 86.0 bits (94), Expect = 8e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 32022 AGGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTA 32078 ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| Sbjct 17038 AGGATTCGAACCTGTGACCGTCTGCTTAGAAGGCAGATGCTCTATCCAGCTGAGCTA 16982 >seq1150 Length=48029 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 31214 TCGGGGTGATAGGATTCGAACCTACGGCATCCGCCTCCCAAAGACGGCGCTCTACCAAGC 31273 |||||| || ||||||||||||| || ||||| ||||||||| ||| |||||||| || Sbjct 20958 TCGGGGCGAGAGGATTCGAACCTCCGACATCCTGCTCCCAAAGCAGGCACTCTACCAGGC 21017 Query 31274 TGAGCTACACCCCGA 31288 |||||||| |||||| Sbjct 21018 TGAGCTACGCCCCGA 21032 >seq2674 Length=3805 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 176133 GGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCCTCCATTAACCACTCG 176192 ||||||||||| ||||||| |||||| ||||||||||||||| | || ||||||||||| Sbjct 3501 GGATTTGAACCAACGTAGGCTGAGCCAACGGATTTACAGTCCGTCCCCTTTAACCACTCG 3442 Query 176193 GACACC 176198 | |||| Sbjct 3441 GGCACC 3436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620984056413600