Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq13327 401 8e-107 seq303 320 2e-82 >seq13327 Length=3816 Score = 401 bits (444), Expect = 8e-107 Identities = 660/949 (70%), Gaps = 2/949 (0%) Strand=Plus/Minus Query 179777 CCGCCTCTATGTCGGTTGGTTCGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTAT 179836 ||| || ||| |||| ||||| || | | ||| | ||||| | || |||| ||| Sbjct 2796 CCGTCTATATATCGGATGGTTTGGATTATTAATGGTGCCAACGTTATTATTAGCAG-TAT 2738 Query 179837 C-TGCTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAAC 179895 | || ||||| | || || | || || || || || || || ||||| || ||||| | Sbjct 2737 CGTGTTTCATTGCTGCTTTTGTAGCCGCACCGCCAGTAGATATTGATGGAATTCGTGAGC 2678 Query 179896 CCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTT 179955 | || | || || || | || || || || || ||||| || || || || || || Sbjct 2677 CAGTTTCAGGCTCTCTTCTATACGGAAATAATATTATCTCAGGAGCCGTAGTACCGAGTT 2618 Query 179956 CCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGC 180015 | || || |||||| | || || ||| | | || || || | |||| || || Sbjct 2617 CAAATGCTATTGGTATGCATTTGTATACGGTGTGAGATGCGATGTGTATTGAGGAATGAT 2558 Query 180016 TGTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCT 180075 |||||||||| || |||| |||| | || || | || ||| | || || | | | Sbjct 2557 TGTATAACGGAGGACCTTACCAATTCGTTGTACTACATTTCTTAATCGGGGTAGCATCAT 2498 Query 180076 ACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTAG 180135 | | ||||||||||| ||| | ||| || || || ||||| || || || | ||||| Sbjct 2497 ATCTTGGTCGTGAGTGAGAATTAAGTTACCGTTTAGGAATGCGTCCTTGAATTTTCGTAG 2438 Query 180136 CATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAG 180195 | | ||||| ||||| || |||||||| |||||||| || || || || |||| |||| Sbjct 2437 CTTTCTCTGCACCAGTTGCAGCAGCATCGGCTGTATTTCTAGTTTACCCAATCGGACAAG 2378 Query 180196 GTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTT 180255 | || || || || | |||||| || || |||||||| || ||||||| |||||| || | Sbjct 2377 GATCTTTTTCAGATGGAATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGCTAGTAT 2318 Query 180256 TCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCT 180315 |||| |||||||| || ||| | |||||||| ||||||||| ||||| ||||| || | Sbjct 2317 TCCAGGCAGAGCATAATATCTTAATGCACCCTTTCCACATGGCTGGAGTGGCAGGAGTAT 2258 Query 180316 TCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTG 180375 | || || || | || || ||||| || || | ||||| || | | || | Sbjct 2257 TTGGAGGATCTTTATTTAGTGCTATGCATGGATCTTTAGTTACATCAACTTTAATTTCTA 2198 Query 180376 AAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCT 180435 || | |||| ||| || | || || || || || || || || ||| | || || | Sbjct 2197 TGACTAGTGAAGATGAATCACCTAATTATGGGTATAAATTCGGACAGGAATATGAAACAT 2138 Query 180436 ACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCA 180495 | || ||||| || || || ||||||||||| ||||| ||||| || | ||| || | Sbjct 2137 ATAATATCGTAGCCGCGCACGGATACTTCGGGCGTCTAATCTTTCAATTCGCAAGTTTTA 2078 Query 180496 ACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCA 180555 | ||||| ||||| | ||||||||||| ||| || || || ||||| ||||| || | Sbjct 2077 ATAACTCACGTTCTTTACACTTCTTCCTTGCAATTTGACCGGTAGTTGGAATCTGATTAA 2018 Query 180556 CTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCA 180615 | ||| |||| | || || ||||| ||||| || || || ||||| |||||||| || | Sbjct 2017 CAGCAATGGGAATTAGTACTATGGCTTTCAATCTAAATGGATTCAATTTCAACCAATCAA 1958 Query 180616 TCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTC 180675 ||||||||| |||| ||||| | | ||| || || | | || || || || Sbjct 1957 TCATTGATGCAGAAGGACGTGTAATTTCGAGTTGAGCCGATATCTTAAATCGTGCAAATC 1898 Query 180676 TGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGA 180724 | || |||||||| ||||| |||||||| || ||||| ||||| || || Sbjct 1897 TAGGAATGGAAGTAATGCATGAGCGTAACGCGCACAATTTCCCTCTAGA 1849 >seq303 Length=42796 Score = 320 bits (354), Expect = 2e-82 Identities = 654/966 (68%), Gaps = 8/966 (1%) Strand=Plus/Minus Query 181460 TTTGTCTTTGTGGGCTGGTCTGGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGG 181519 ||| | ||||| ||||| || ||| || | |||||||| || |||||| | || | || Sbjct 27674 TTTATATTTGTTGGCTGATCCGGATTATTGCTTTTTCCGACCGCTTATTTGGCGGTCGGA 27615 Query 181520 GGCTGGCTCACTGGCACTACTTTTGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCC 181579 || || | || |||||||| || || ||||| | || || | || ||| | Sbjct 27614 GGATGATTTGTGGGTACTACTTTCGTAACAAGTTGGTATTCTCATGGTCTAGCATCTAGC 27555 Query 181580 TACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGT 181639 || || || ||| |||||| | || || ||||| || ||||| ||| | ||||| Sbjct 27554 TATCTAGAAGGTTGTAATTTTTTAACTGCTGCTGTATCCACGCCGGCTAATTGCATGGGG 27495 Query 181640 CATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAA 181699 || || ||| | ||| ||| ||||| ||||||||||| ||| || ||| ||| Sbjct 27494 CACTCGCTTTTATTACCTTGAGGTCCCGAAGCTCAGGGACTTTTAACTCGATGGTATCAA 27435 Query 181700 CTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATG 181759 |||| || | || |||| | || | || || |||| | | || ||| Sbjct 27434 GTTGGAGGTTTATGAAATTTTATCGCCTTTCATGGGACCTTAGGGTTGGCAGGATTTTGT 27375 Query 181760 CTCAGGCAATTTGAACTTGCTCGTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTT 181819 | || ||||||||| |||| | || | | || || || ||||| |||||||| Sbjct 27374 TTAAGACAATTTGAAATTGCAAGGTTAGTGCAGGTTCGTCCATATAATGCAATTGCTTTC 27315 Query 181820 TCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGT 181879 ||||||| ||||| || || || ||||| ||| | || |||||| | || ||| | ||| Sbjct 27314 ACCGGTCCAATTGCAGTTTTTGTATCTGTCTTTTTAATTTATCCTTTAGGTCAAGCGAGT 27255 Query 181880 TGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAG 181939 || || ||||| || ||||| || || || || ||||| | || | || ||| | || Sbjct 27254 TGATTTTTTGCACCAAGTTTTGGAGTGGCTGCCATTTTTAGATTTTTACTATTCTTTCAA 27195 Query 181940 GGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGT 181999 || |||||||| || || || ||||| ||||||||||||||||| || ||||| | || Sbjct 27194 GGGTTTCATAACTGAACACTGAATCCTTTCCATATGATGGGTGTCGCAGGTATTTTAGGA 27135 Query 182000 GGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACG-- 182057 || || ||| | ||||| || || || | ||| || | ||||| | ||| |||| | Sbjct 27134 GGTGCGTTATTGTCTGCCATCCATGGAGCGACTGTACAAAATACCTTATATAAAGATGGT 27075 Query 182058 GTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAA 182117 ||| | | | | ||||| || || |||| ||| |||||| || ||||||| Sbjct 27074 GTGTCGTATGACA-CCTTTC-GTGCTTTTAGCCCAACGCAATTAGAAGAGACTTATTCAA 27017 Query 182118 TGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGT 182177 |||| || || || || || || |||||||| || || | || ||| || ||| | | Sbjct 27016 TGGTAACCGCAAATCGTTTTTGATCTCAGATTTTTGGAGTAGCTTTTTCTAACAAGCGTT 26957 Query 182178 GGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTA 182237 |||| |||||||||||| | || || || || | || | || || | | | || | Sbjct 26956 GGTTACATTTCTTTATGTTATTCGTACCGGTAACTGGCTTATGAACTTCTGCTTTTGGGA 26897 Query 182238 TTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCAT 182297 | ||||||| || | || | | || || || ||||| || ||||| | ||||| Sbjct 26896 TGGTTGGTCTGGCCTTAAATTTAAGGGCATACGATTTTGTGTCTCAAGAGTTACGAGCAG 26837 Query 182298 CAGAAGACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGC 182357 | ||||| || || ||||| ||||| || || || || || | | |||||||| | | Sbjct 26836 CCGAAGATCCTGAATTCGAAACGTTTTATACCAAAAATATATTGCTTAATGAAGGAATCC 26777 Query 182358 GTGCATGGTTAGC--ACCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGT 182415 |||| || | || ||| || ||||| ||||| || || | ||||| |||||||| Sbjct 26776 GTGCTTGAATGGCTATGCAG--GACCAACCTCATGAAAATTTCATTTTCCCAGAGGAAGT 26719 Query 182416 ATTACC 182421 ||||| Sbjct 26718 TTTACC 26713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609277561167600