Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq13327 428 5e-115 seq303 306 4e-78 >seq13327 Length=3816 Score = 428 bits (474), Expect = 5e-115 Identities = 663/947 (70%), Gaps = 0/947 (0%) Strand=Plus/Minus Query 169438 TATGTTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTC 169497 ||| | || |||||||| | ||||| | ||| ||| | ||||| | | |||||| Sbjct 2789 TATATCGGATGGTTTGGATTATTAATGGTGCCAACGTTATTATTAGCAGTATCGTGTTTC 2730 Query 169498 ATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCG 169557 || | ||| || | || ||||| || || ||||| || ||||| | || ||||| | Sbjct 2729 ATTGCTGCTTTTGTAGCCGCACCGCCAGTAGATATTGATGGAATTCGTGAGCCAGTTTCA 2670 Query 169558 GGTTCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCT 169617 || ||| | | || || || || || ||||| || || || || || ||||| ||| Sbjct 2669 GGCTCTCTTCTATACGGAAATAATATTATCTCAGGAGCCGTAGTACCGAGTTCAAATGCT 2610 Query 169618 ATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAAT 169677 || || | || || || | | || || || | |||| ||||| |||||||| Sbjct 2609 ATTGGTATGCATTTGTATACGGTGTGAGATGCGATGTGTATTGAGGAATGATTGTATAAC 2550 Query 169678 GGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGA 169737 || || ||||| || || || | | || ||| | || || | || |||| | || Sbjct 2549 GGAGGACCTTACCAATTCGTTGTACTACATTTCTTAATCGGGGTAGCATCATATCTTGGT 2490 Query 169738 AGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCT 169797 | |||| ||| || ||| | ||||||||||||||||| || | || || | |||| Sbjct 2489 CGTGAGTGAGAATTAAGTTACCGTTTAGGAATGCGTCCTTGAATTTTCGTAGCTTTCTCT 2430 Query 169798 GCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTC 169857 |||||||| | || |||| |||||||| |||| |||||| | || || || || || Sbjct 2429 GCACCAGTTGCAGCAGCATCGGCTGTATTTCTAGTTTACCCAATCGGACAAGGATCTTTT 2370 Query 169858 TCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCA 169917 || ||||| ||||| ||||| || || || || |||||||| ||| | || ||||| ||| Sbjct 2369 TCAGATGGAATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGCTAGTATTCCAGGCA 2310 Query 169918 GAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGA 169977 |||||||| || ||||||| |||||||||||||| ||||| |||||| | || |||||| Sbjct 2309 GAGCATAATATCTTAATGCACCCTTTCCACATGGCTGGAGTGGCAGGAGTATTTGGAGGA 2250 Query 169978 TCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACA 170037 |||||||| || |||||||| || | ||||| ||| || |||| || | Sbjct 2249 TCTTTATTTAGTGCTATGCATGGATCTTTAGTTACATCAACTTTAATTTCTATGACTAGT 2190 Query 170038 GAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATA 170097 || | || |||| || ||||| ||||| |||||||| ||| | |||||||| || || Sbjct 2189 GAAGATGAATCACCTAATTATGGGTATAAATTCGGACAGGAATATGAAACATATAATATC 2130 Query 170098 GTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCA 170157 ||||| || ||||| ||||| || ||||| ||||| || | || || || |||||| Sbjct 2129 GTAGCCGCGCACGGATACTTCGGGCGTCTAATCTTTCAATTCGCAAGTTTTAATAACTCA 2070 Query 170158 AGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATG 170217 | | ||||||||||||| ||| ||| || || || | | || ||||| | ||| Sbjct 2069 CGTTCTTTACACTTCTTCCTTGCAATTTGACCGGTAGTTGGAATCTGATTAACAGCAATG 2010 Query 170218 GGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT 170277 || || | || ||||| ||||| | ||||| ||||| || ||||||||| | ||||| Sbjct 2009 GGAATTAGTACTATGGCTTTCAATCTAAATGGATTCAATTTCAACCAATCAATCATTGAT 1950 Query 170278 GCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATG 170337 || | ||| | | | | || | ||| | |||| | ||||| | || ||| Sbjct 1949 GCAGAAGGACGTGTAATTTCGAGTTGAGCCGATATCTTAAATCGTGCAAATCTAGGAATG 1890 Query 170338 GAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 ||||| |||||||| | || || ||||| ||||| ||||| |||| Sbjct 1889 GAAGTAATGCATGAGCGTAACGCGCACAATTTCCCTCTAGATTTAGC 1843 >seq303 Length=42796 Score = 306 bits (338), Expect = 4e-78 Identities = 646/954 (68%), Gaps = 35/954 (4%) Strand=Plus/Minus Query 170620 TCGGTGGTTGGTTCTTAGGGACTACCTTCGTTACATCATGGTATACACATGGTGTTGCTT 170679 |||| || || || | || ||||| ||||| ||| |||||| | |||||| | || | Sbjct 27619 TCGGAGGATGATTTGTGGGTACTACTTTCGTAACAAGTTGGTATTCTCATGGTCTAGCAT 27560 Query 170680 CCTCATATCTTGAGGGATGTAACTTCCTAACAGCAGCAGTTTCCACACCTGGCGAC--GC 170737 | ||||| || || ||||| || |||| || || || ||||| || ||| | || Sbjct 27559 CTAGCTATCTAGAAGGTTGTAATTTTTTAACTGCTGCTGTATCCACGCC-GGCTAATTGC 27501 Query 170738 AATGGGTCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTG 170797 | |||| || ||| | || | ||| || || ||||| || || || ||| || Sbjct 27500 A-TGGGGCACTCGCTTTTATTACCTTGAGGTCCCGAAGCTCAGGGACTTTTAACTCGATG 27442 Query 170798 GTTACAACTCGGAGGTTTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGG 170857 || ||| | ||||||||||| || ||| | || || ||||| ||| || | ||| Sbjct 27441 GTATCAAGTTGGAGGTTTATGAAATTTTATCGCCTTTCATGGGACCTTAGGGTTGGCAGG 27382 Query 170858 TTTCATGCTCAGACAATTTGAGATCGCAGGACTTGTAGGCA--TCAGACCTTACAACGCA 170915 || | ||||||||||| || ||| | | || ||| | | || || || ||| Sbjct 27381 ATTTTGTTTAAGACAATTTGAAATTGCAAGGTTAGT--GCAGGTTCGTCCATATAATGCA 27324 Query 170916 CTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCA-TCTTTCTGATCTATCCACTAGG 170974 | || ||| | | | || ||||| || || | ||||| | || ||||| |||| Sbjct 27323 ATTGCTTTCACCGGTCCAATTGCAGTTTTTG-TATCTGTCTTTTTAATTTATCCTTTAGG 27265 Query 170975 TCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCAATTTTTCGTTATATCTT 171034 ||| ||||| || || |||||| || || || || || |||||| | | | | | Sbjct 27264 TCAAGCGAGTTGATTTTTTGCACCAAGTTTTGGAGTGGCTGCCATTTTTAGATTTTTACT 27205 Query 171035 ATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGG 171094 |||| | ||||| || || ||| ||| ||||||| || || ||||||||||| ||||| Sbjct 27204 ATTCTTTCAAGGGTTTCATAACTGAACACTGAATCCTTTCCATATGATGGGTGTCGCAGG 27145 Query 171095 AATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTA 171154 || |||| || || ||||| | |||||| ||||| || || || || || || || || Sbjct 27144 TATTTTAGGAGGTGCGTTATTGTCTGCCATCCATGGAGCGACTGTACAAAATACCTTATA 27085 Query 171155 TGAAGACACATCAGTTTATACTGATAATAAAATTCAAAGCACAACATTCCGTGCCTTTGA 171214 | |||| || | | | | ||| | ||| |||| ||| Sbjct 27084 TAAAGATG-----GTGTGTCGT---------------ATGACACCTTTC-GTGCTTTTAG 27046 Query 171215 TCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAACAGATTCTGGTCACAGAT 171274 || || || |||||| ||||| ||| | || ||||| | || || || ||||| Sbjct 27045 CCCAACGCAATTAGAAGAGACTTATTCAATGGTAACCGCAAATCGTTTTTGATCTCAGAT 26986 Query 171275 ATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTTATGTTGTTCGTTCCTGT 171334 ||||| | ||||| |||||||| | | ||||| ||| ||||||| ||||| || || Sbjct 26985 TTTTGGAGTAGCTTTTTCTAACAAGCGTTGGTTACATTTCTTTATGTTATTCGTACCGGT 26926 Query 171335 CATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTTAACCTCAGAGCATA 171394 | || | || || || || | || || || ||||| || | || | || ||||| Sbjct 26925 AACTGGCTTATGAACTTCTGCTTTTGGGATGGTTGGTCTGGCCTTAAATTTAAGGGCATA 26866 Query 171395 CGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTCGAGACTTTCTACAC 171454 ||||||||| ||||||||| || ||||||| ||||| || || ||||| || || || || Sbjct 26865 CGATTTTGTGTCTCAAGAGTTACGAGCAGCCGAAGATCCTGAATTCGAAACGTTTTATAC 26806 Query 171455 TAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTC-AT-CAGTTGACCAACCA 171512 || |||||| | ||||||||||| || | || || ||| | || ||| |||||||| Sbjct 26805 CAAAAATATATTGCTTAATGAAGGAATCCGTGCTTGAATGGCTATGCAG--GACCAACCT 26748 Query 171513 CATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 171566 ||||| || ||| | |||||||| ||||| ||||| | || || || || ||| Sbjct 26747 CATGAAAATTTCATTTTCCCAGAGGAAGTTTTACCTCGCGGAAATGCTCTCTAA 26694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578150740929600