Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq13327 434 1e-116 seq303 352 3e-92 >seq13327 Length=3816 Score = 434 bits (480), Expect = 1e-116 Identities = 671/952 (70%), Gaps = 6/952 (1%) Strand=Plus/Minus Query 167892 CCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTAT 167951 ||| || ||| |||| ||||| || || | ||| | ||||| | || |||| ||| Sbjct 2796 CCGTCTATATATCGGATGGTTTGGATTATTAATGGTGCCAACGTTATTATTAGCAG-TAT 2738 Query 167952 C-TGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAAC 168010 | |||||||| | || || || || || || || || || || || || || ||||| | Sbjct 2737 CGTGTTTCATTGCTGCTTTTGTAGCCGCACCGCCAGTAGATATTGATGGAATTCGTGAGC 2678 Query 168011 CCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTCTT 168070 | || | || || || | || || || || || ||||| || || || || || || Sbjct 2677 CAGTTTCAGGCTCTCTTCTATACGGAAATAATATTATCTCAGGAGCCGTAGTACCGAGTT 2618 Query 168071 CTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGT 168130 | ||||||||||| | || || ||| | | || || || | | || || || | Sbjct 2617 CAAATGCTATTGGTATGCATTTGTATACGGTGTGAGATGCGATGTGTATTGAGGAATGAT 2558 Query 168131 TGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGG--TATCTATGC 168188 |||||||||| || |||| |||| | || || | || ||| | ||||| || | || | Sbjct 2557 TGTATAACGGAGGACCTTACCAATTCGTTGTACTACATTTCTTAATCGGGGTAGC-AT-C 2500 Query 168189 ATACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGT 168248 ||| | || ||||| || ||| | || |||||||| |||||||| || || | || Sbjct 2499 ATATCTTGGTCGTGAGTGAGAATTAAGTTACCGTTTAGGAATGCGTCCTTGAATTTTCGT 2440 Query 168249 TGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCA 168308 || | |||||||||||| || ||||| || ||||| ||||| || || |||| || Sbjct 2439 AGCTTTCTCTGCACCAGTTGCAGCAGCATCGGCTGTATTTCTAGTTTACCCAATCGGACA 2380 Query 168309 AGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGT 168368 ||| ||| || |||| |||||| || ||||| || ||||||||||||| |||| | || Sbjct 2379 AGGATCTTTTTCAGATGGAATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGCTAGT 2320 Query 168369 CTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGT 168428 ||||| || ||||| ||||| | ||||| || ||||| ||| || || || || || Sbjct 2319 ATTCCAGGCAGAGCATAATATCTTAATGCACCCTTTCCACATGGCTGGAGTGGCAGGAGT 2260 Query 168429 ATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAG 168488 |||||| || ||| |||||||||||||| ||| ||| ||||| || || | || Sbjct 2259 ATTTGGAGGATCTTTATTTAGTGCTATGCATGGATCTTTAGTTACATCAACTTTAATTTC 2200 Query 168489 AGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAAC 168548 ||| | |||| ||||| | || || || || || |||||||| ||| | ||||| Sbjct 2199 TATGACTAGTGAAGATGAATCACCTAATTATGGGTATAAATTCGGACAGGAATATGAAAC 2140 Query 168549 ATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 168608 ||| || ||||||||||| || || |||||||| ||| | ||||| |||| ||| || Sbjct 2139 ATATAATATCGTAGCCGCGCACGGATACTTCGGGCGTCTAATCTTTCAATTCGCAAGTTT 2080 Query 168609 CAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 168668 || ||||| || || || |||||||||||||| || || || || || ||||| || Sbjct 2079 TAATAACTCACGTTCTTTACACTTCTTCCTTGCAATTTGACCGGTAGTTGGAATCTGATT 2020 Query 168669 CACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 168728 || || | || | || ||||| ||||| || || || ||||| |||||||| || Sbjct 2019 AACAGCAATGGGAATTAGTACTATGGCTTTCAATCTAAATGGATTCAATTTCAACCAATC 1960 Query 168729 CATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGG 168788 ||| |||||| | || ||||| | | || || ||| | | || || || Sbjct 1959 AATCATTGATGCAGAAGGACGTGTAATTTCGAGTTGAGCCGATATCTTAAATCGTGCAAA 1900 Query 168789 TCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAT 168840 ||| || |||||||| ||||||||||||||||| ||||| ||||| || ||| Sbjct 1899 TCTAGGAATGGAAGTAATGCATGAGCGTAACGCGCACAATTTCCCTCTAGAT 1848 >seq303 Length=42796 Score = 352 bits (390), Expect = 3e-92 Identities = 660/961 (69%), Gaps = 8/961 (1%) Strand=Plus/Minus Query 169343 TTTGTATTCATTGGTTGGTCTGGTCTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGA 169402 ||| |||| |||| || || || || | ||| |||| || || ||| | || | ||| Sbjct 27674 TTTATATTTGTTGGCTGATCCGGATTATTGCTTTTTCCGACCGCTTATTTGGCGGTCGGA 27615 Query 169403 GGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGGTACACCCACGGACTCGCTTCCAGT 169462 || || | ||||| | || || || ||||| | || || || || || || Sbjct 27614 GGATGATTTGTGGGTACTACTTTCGTAACAAGTTGGTATTCTCATGGTCTAGCATCTAGC 27555 Query 169463 TACTTAGAAGGCGCTAACTTCCTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGA 169522 || ||||||| ||| || | ||||||||||| || || ||| | ||||| Sbjct 27554 TATCTAGAAGGTTGTAATTTTTTAACTGCTGCTGTATCCACGCCGGCTAATTGCATGGGG 27495 Query 169523 CACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAA 169582 ||||| || | || | || ||||| ||||| || || ||| ||| |||| |||| Sbjct 27494 CACTCGCTTTTATTACCTTGAGGTCCCGAAGCTCAGGGACTTTTAACTCGATGGTATCAA 27435 Query 169583 TTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATG 169642 | || ||| | || || ||| | || ||||||| | || | ||| || || || Sbjct 27434 GTTGGAGGTTTATGAAATTTTATCGCCTTTCATGGGACCTTAGGGTTGGCAGGATTT-TG 27376 Query 169643 CTTAGG-CAGTTTGAATTGGCACGTCTTATTGGCA--TCCGTCCTTATAATGCTATTGCA 169699 ||| | || |||||| | ||| | ||| || || | ||||| |||||||| ||||| Sbjct 27375 TTTAAGACAATTTGAAATTGCAAGG-TTAGTG-CAGGTTCGTCCATATAATGCAATTGCT 27318 Query 169700 TTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCC 169759 ||| | ||||| ||||| || ||||| ||||||| | || || || | || || | Sbjct 27317 TTCACCGGTCCAATTGCAGTTTTTGTATCTGTCTTTTTAATTTATCCTTTAGGTCAAGCG 27258 Query 169760 TCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTG 169819 || || ||||| || |||||||| | || || || || || | | ||| | Sbjct 27257 AGTTGATTTTTTGCACCAAGTTTTGGAGTGGCTGCCATTTTTAGATTTTTACTATTCTTT 27198 Query 169820 CAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTG 169879 ||||| || || ||||| || ||||||| ||||| ||||||||||| ||||| || || Sbjct 27197 CAAGGGTTTCATAACTGAACACTGAATCCTTTCCATATGATGGGTGTCGCAGGTATTTTA 27138 Query 169880 GGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGAC 169939 || || || || | ||||| |||||||| | || ||| | || || || ||| |||| Sbjct 27137 GGAGGTGCGTTATTGTCTGCCATCCATGGAGCGACTGTACAAAATACCTTATATAAAGAT 27078 Query 169940 GGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCT 169999 |||| | | | || || || ||| | || || ||||||||||||||| Sbjct 27077 GGTGTGTCGTATGACACCTTTCGTGCTTTTAGCCCAACGCAATTAGAAGAGACTTATTCA 27018 Query 170000 ATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGT 170059 ||||| || ||||| || || || || ||||| || || | || ||||||||||||||| Sbjct 27017 ATGGTAACCGCAAATCGTTTTTGATCTCAGATTTTTGGAGTAGCTTTTTCTAACAAGCGT 26958 Query 170060 TGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGC 170119 ||| | ||||| || ||||| || || || || | || | || || || || |||| Sbjct 26957 TGGTTACATTTCTTTATGTTATTCGTACCGGTAACTGGCTTATGAACTTCTGCTTTTGGG 26898 Query 170120 ATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCA 170179 || |||| || || | ||| | | || |||||||| ||| ||| ||| | ||||| Sbjct 26897 ATGGTTGGTCTGGCCTTAAATTTAAGGGCATACGATTTTGTGTCTCAAGAGTTACGAGCA 26838 Query 170180 GCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTT 170239 || |||||||| ||||| || || || || |||||||| || | | ||||||||| | Sbjct 26837 GCCGAAGATCCTGAATTCGAAACGTTTTATACCAAAAATATATTGCTTAATGAAGGAATC 26778 Query 170240 CGTGCATGGTTGGCACCTGC-TGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGT 170298 ||||| || |||| ||| || ||||| |||||||| ||||| |||||||| ||||| Sbjct 26777 CGTGCTTGAATGGC-TATGCAGGACCAACCTCATGAAAATTTCATTTTCCCAGAGGAAGT 26719 Query 170299 T 170299 | Sbjct 26718 T 26718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573420230845200