Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq13327 417 1e-111 seq303 260 2e-64 >seq13327 Length=3816 Score = 417 bits (462), Expect = 1e-111 Identities = 633/899 (70%), Gaps = 4/899 (0%) Strand=Plus/Minus Query 171900 AGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAAT 171959 ||||| | | || ||||| | ||| || | || ||||| || || ||||| || ||||| Sbjct 2745 AGCAGTATCGTGTTTCATTGCTGCTTTTGTAGCCGCACCGCCAGTAGATATTGATGGAAT 2686 Query 171960 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGT 172019 | || |||||| | || ||| | |||| || || || || ||||| || || || || Sbjct 2685 TCGTGAGCCAGTTTCAGGCTCTCTTCTATACGGAAATAATATTATCTCAGGAGCCGTAGT 2626 Query 172020 TCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTA-- 172077 || ||||| || || ||| | || || || | | || || || | ||| Sbjct 2625 ACCGAGTTCAAATGCTATTGGTATGCATTTGTATACGGTGTGAGATGCG--ATGTGTATT 2568 Query 172078 GATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGT 172137 || ||||| ||||| || || || ||||| || || || | | || ||| | ||||| Sbjct 2567 GAGGAATGATTGTATAACGGAGGACCTTACCAATTCGTTGTACTACATTTCTTAATCGGG 2508 Query 172138 ATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGG 172197 | || |||| | || | |||| ||| || ||| | ||||| ||| | || || Sbjct 2507 GTAGCATCATATCTTGGTCGTGAGTGAGAATTAAGTTACCGTTTAGGAATGCGTCCTTGA 2448 Query 172198 ATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCA 172257 || | ||||| | || ||||| || ||||||||| ||||| || || || || ||| Sbjct 2447 ATTTTCGTAGCTTTCTCTGCACCAGTTGCAGCAGCATCGGCTGTATTTCTAGTTTACCCA 2388 Query 172258 TTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTT 172317 |||| || || || || || ||||| ||||| ||||| || || || || |||||||| Sbjct 2387 ATCGGACAAGGATCTTTTTCAGATGGAATGCCTCTAGGAATTTCTGGAACATTCAACTTC 2328 Query 172318 ATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTA 172377 ||| | || ||||| ||||||||||| || ||||||| |||||||||||||| ||||| Sbjct 2327 ATGCTAGTATTCCAGGCAGAGCATAATATCTTAATGCACCCTTTCCACATGGCTGGAGTG 2268 Query 172378 GCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCT 172437 |||||| | ||||||||||||||||| || ||||| || |||||||||||||| || Sbjct 2267 GCAGGAGTATTTGGAGGATCTTTATTTAGTGCTATGCATGGATCTTTAGTTACATCAACT 2208 Query 172438 CTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAA 172497 |||| ||| | ||||| ||||||| || || || || || |||||||| ||| Sbjct 2207 TTAATTTCTATGACTAGTGAAGATGAATCACCTAATTATGGGTATAAATTCGGACAGGAA 2148 Query 172498 GAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTAT 172557 | |||||||| || || ||||| || ||||| ||||| || ||||| ||||| || | Sbjct 2147 TATGAAACATATAATATCGTAGCCGCGCACGGATACTTCGGGCGTCTAATCTTTCAATTC 2088 Query 172558 GCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGT 172617 || ||| || |||||| | | | ||||||||||| ||| ||| || || || | Sbjct 2087 GCAAGTTTTAATAACTCACGTTCTTTACACTTCTTCCTTGCAATTTGACCGGTAGTTGGA 2028 Query 172618 GTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTC 172677 | || ||||| | ||||| || |||| ||||| ||||| || || || ||||| ||| Sbjct 2027 ATCTGATTAACAGCAATGGGAATTAGTACTATGGCTTTCAATCTAAATGGATTCAATTTC 1968 Query 172678 AACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTTAAC 172737 ||||||||| | | ||||| | || | || | | || | || | | || Sbjct 1967 AACCAATCAATCATTGATGCAGAAGGACGTGTAATTTCGAGTTGAGCCGATATCTTAAAT 1908 Query 172738 AGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGA 172796 | ||||| ||||| |||||||| |||||||| | || || ||||| ||||| |||| Sbjct 1907 CGTGCAAATCTAGGAATGGAAGTAATGCATGAGCGTAACGCGCACAATTTCCCTCTAGA 1849 >seq303 Length=42796 Score = 260 bits (288), Expect = 2e-64 Identities = 637/954 (67%), Gaps = 35/954 (4%) Strand=Plus/Minus Query 173042 TCGGTGGTTGGTTCTTAGGAACTACCTTCGTTACATCATGGTATACACATGGTATTGCAT 173101 |||| || || || | || ||||| ||||| ||| |||||| | |||||| | |||| Sbjct 27619 TCGGAGGATGATTTGTGGGTACTACTTTCGTAACAAGTTGGTATTCTCATGGTCTAGCAT 27560 Query 173102 CTTCATATCTTGAAGGAGCAAACTTTTTAACAGCAGCAGTCTCCACACCTGGCGAC--GC 173159 || ||||| ||||| || |||||||| || || || ||||| || ||| | || Sbjct 27559 CTAGCTATCTAGAAGGTTGTAATTTTTTAACTGCTGCTGTATCCACGCC-GGCTAATTGC 27501 Query 173160 AATGGGTCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTCGTACGTTG 173219 | |||| || ||| | || | ||| || || ||||| || || || || || Sbjct 27500 A-TGGGGCACTCGCTTTTATTACCTTGAGGTCCCGAAGCTCAGGGACTTTTAACTCGATG 27442 Query 173220 GTTACAACTCGGAGGACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGG 173279 || ||| | ||||| |||| || ||| | || || ||||| ||| || | ||| Sbjct 27441 GTATCAAGTTGGAGGTTTATGAAATTTTATCGCCTTTCATGGGACCTTAGGGTTGGCAGG 27382 Query 173280 TTTCATGCTCCGTCAGTTTGAGATCGCAGGACTTGTAGGCA--TCAGACCTTACAACGCA 173337 || | | || ||||| || ||| | | || ||| | | || || || ||| Sbjct 27381 ATTTTGTTTAAGACAATTTGAAATTGCAAGGTTAGT--GCAGGTTCGTCCATATAATGCA 27324 Query 173338 CTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCA-TCTTTTTAATCTACCCACTAGG 173396 | || ||| | | | || ||||| || || | |||||||||| || || |||| Sbjct 27323 ATTGCTTTCACCGGTCCAATTGCAGTTTTTG-TATCTGTCTTTTTAATTTATCCTTTAGG 27265 Query 173397 GCAGCACAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATCTT 173456 || ||||| || || ||||| || || || || || || ||| | | | | | Sbjct 27264 TCAAGCGAGTTGATTTTTTGCACCAAGTTTTGGAGTGGCTGCCATTTTTAGATTTTTACT 27205 Query 173457 ATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGG 173516 |||| | ||||| || || ||| ||| ||||||| || || ||||||||||| ||||| Sbjct 27204 ATTCTTTCAAGGGTTTCATAACTGAACACTGAATCCTTTCCATATGATGGGTGTCGCAGG 27145 Query 173517 AATACTAGGTGGAGCATTACTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTA 173576 || |||| || || ||| | | |||||| ||||| || || || || || || || || Sbjct 27144 TATTTTAGGAGGTGCGTTATTGTCTGCCATCCATGGAGCGACTGTACAAAATACCTTATA 27085 Query 173577 TGAAGACACATCACAATATACTGAAGGTAAGATTCAATCCACAACTTTCAGAGCATTTGA 173636 | |||| ||| | || ||| ||||| | || ||| Sbjct 27084 TAAAGAT------------------GGTGTG--TCGTATGACACCTTTC-GTGCTTTTAG 27046 Query 173637 TCCTACACAGGAAGAAGAAACTTATAGTATGATTACAGCGAACAGATTCTGGTCACAGAT 173696 || || || |||||| |||||| ||| | || || || | || || || ||||| Sbjct 27045 CCCAACGCAATTAGAAGAGACTTATTCAATGGTAACCGCAAATCGTTTTTGATCTCAGAT 26986 Query 173697 ATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACTTCCTCATGTTGTTCGTACCTGT 173756 ||||| | || ||||| ||||| | | ||||| ||| | ||||| |||||||| || Sbjct 26985 TTTTGGAGTAGCTTTTTCTAACAAGCGTTGGTTACATTTCTTTATGTTATTCGTACCGGT 26926 Query 173757 CATGGGTATGTGGACATCATCCATAGGTATCGTAGGTCTTGCACTTAACCTTA-GAGCAT 173815 | || | || || || | | || || || ||||| || ||||| ||| | |||| Sbjct 26925 AACTGGCTTATGAACTTCTGCTTTTGGGATGGTTGGTCTGGC-CTTAAATTTAAGGGCAT 26867 Query 173816 ACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTACA 173875 |||| ||||| ||||||||| || ||||||| |||||||| || ||||| || || || | Sbjct 26866 ACGATTTTGTGTCTCAAGAGTTACGAGCAGCCGAAGATCCTGAATTCGAAACGTTTTATA 26807 Query 173876 CTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTA-GATCAACCA 173934 | || |||||| | ||||||||||| || | || || ||| | | || | || ||||| Sbjct 26806 CCAAAAATATATTGCTTAATGAAGGAATCCGTGCTTGAATGGC-TATGCAGGACCAACCT 26748 Query 173935 CATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 173988 ||||| || ||| | || ||||| ||||| ||||| | || || || || ||| Sbjct 26747 CATGAAAATTTCATTTTCCCAGAGGAAGTTTTACCTCGCGGAAATGCTCTCTAA 26694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586972934618400