Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq10895 244 1e-59 >seq10895 Length=16309 Score = 244 bits (270), Expect = 1e-59 Identities = 611/919 (66%), Gaps = 22/919 (2%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 |||||| || |||| || ||||||||||||||||| ||||| |||| || ||| || || Sbjct 9831 TTTTTGGTACTCGGAGACCCTTTTTTCAAAGAAATTGGTTTTCCCCTGTAGTGAAAT-CA 9773 Query 18729 T-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATA 18787 | |||||||||||||||||||| | |||||||| ||||| || | ||| | | Sbjct 9772 TATCCATAAAATCAAATGGATTGGTAGAATTATATACTTTTTCACATTGAAGTTCAACCA 9713 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847 ||| || |||| |||||||| | |||| | |||||| | ||||| || || | Sbjct 9712 ATAGCCTGTCCGTTACAAATTCCAAATATTGGGTCATCAGTTTTGCGTTCATCCCAATGA 9653 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 | |||||||| | || |||| ||| || ||||||||| | || | || || || Sbjct 9652 GGCTTACAGGTAGGGATTCCGTAATAAACTCGCGTTCTATATCCAAGGCATTTGTTAGAA 9593 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGT-----TTAAACATCAAACA 18962 | | || || || | | | | | | || | || || || | Sbjct 9592 TCTGTGTAATCCTCTCCT--TGGGCACCTTGTTGACCAAGTGGTGGTTGTGCAAATGAAC 9535 Query 18963 TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACC 19022 || |||| ||||| | || || || | ||||||||||| ||||| || || || Sbjct 9534 GGCGTAATCGCAATGCATGCCTTCATCACGGGAAATCAATTCATTGGAAAAAGTCAACCC 9475 Query 19023 AGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATAT 19082 ||||| | |||||||| || ||||| || || ||| ||| | || |||||||| || Sbjct 9474 GGGCATTAACCCTCTTTTCTTCAACCAAAAAATGGAACAAAAAGCCCCGGAAAAGAAAAT 9415 Query 19083 ACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAAT 19142 ||||| || || ||||| || | | || ||| || |||| | || | || Sbjct 9414 CCCTTCCACAGCGGCAAAGGCGATCAATCGTTCGGCAAAACTTGGGGAATCA------AT 9361 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 |||| | || |||||||| ||||| || || | ||| | |||| |||| | ||| Sbjct 9360 CCATCTAAGCGCCCAATCCGCCTTTTTCTTGATGGCTGGAAAGTTCTCAATAGCCTGAAA 9301 Query 19203 TAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262 || | || | | || || ||||| | |||||||| | ||| |||| Sbjct 9300 AAGGATGTTTTTTTCCTTTTCGTCCTTTACATAGGTGTCTATCAACAGGGAGTAGGTTTC 9241 Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT-TATCT 19321 ||||| || || || || ||||| ||||||||||| | | || || | ||| | Sbjct 9240 GGAATGGATGTTCTCCATCATTATCTGGAATCCGTAAAAGAACTTGGCCTCCGAATAT-T 9182 Query 19322 GTACTTCACT-ACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 | ||||| | ||||||| | ||| ||||||||||||| || || ||||| || ||| Sbjct 9181 GGACTTCGTTCACAAAAT-TCTCGGCCAAATTTTCATTTACAATCCCATCGGATGCGGCA 9123 Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA---TTCCAA 19437 ||||| || || | |||||| ||||| | ||| || ||||| || ||||| Sbjct 9122 AAAAAGGCCAAGATATGTTTTATAAAGTAACGTTCGTCGTCACTTAATTTATCGTTCCAG 9063 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 ||| | ||| | | |||||| | || || | ||||||||| | ||||| |||| Sbjct 9062 TCAGATAAATCCTGATGTAAATCAATCTCCTCGGCGGTCCAAAAACAGGCCTCACATTTT 9003 Query 19498 TTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTT 19557 || ||| | ||| | ||| ||| || || || ||||| |||||||||| |||||| Sbjct 9002 TTGTACCATTCCCACAAATCGTGATGTTCAATGGGGAATATTACAAATCTATCCTTATTT 8943 Query 19558 TCTTTAAGAATAGGTTCCA 19576 || | | |||||| |||| Sbjct 8942 TCCTGCAAAATAGGCTCCA 8924 Score = 188 bits (208), Expect = 8e-43 Identities = 618/957 (65%), Gaps = 16/957 (2%) Strand=Plus/Minus Query 47863 TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAG 47922 |||||||| | ||| |||||||| || | ||||| || ||||| |||| || | Sbjct 11368 TAACAAACATGGGAAGAGCTATAGAGGCCAAGTTACAAACCGCTACTTCATCGGGGGAGG 11309 Query 47923 TATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGAT 47982 |||||| | ||| || | ||| ||||| | || |||||||||||| || | |||| Sbjct 11308 TATATTCCAATATCTCGGTACAAAGATTGGAAGATCGGATAGTACCCAAGTTCTTCTGAT 11249 Query 47983 TATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAG 48042 | | || || ||||| ||||||||| | || ||||| || || ||||| | Sbjct 11248 TGCTTTTACGATTGGCCGCATCCTTATAAAGCATATAGGGCGTTCCCGTCTCAATCTGGG 11189 Query 48043 ATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCT---AGCTTTATTAT 48099 |||| | || || ||| | | ||| ||||||| | | | | | | |||| | Sbjct 11188 ATTCCAATATTTTTTCCCATAAATCCCTGGCCTTTA---CCGTTTTGCGACCCTTATCCT 11132 Query 48100 CATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAAC---C 48156 | || ||||| ||||| || |||||||| || | | ||| ||| | Sbjct 11131 CTGCCTCATATTTCAAATATAGTTTTTCAAATTCCTCACTGTG---ATTTGAAAACAATC 11075 Query 48157 CAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAA 48216 | ||||||||||| || ||||| || | |||||| |||| | || | |||| | Sbjct 11074 CTGGACATTCATTGGGGCACATTAAGGTCCAATCTTCATTGGCCTCCACGCGCTTCATGA 11015 Query 48217 ATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCAC 48276 | | |||||| ||||| | || || | ||| | | | | |||||| || || Sbjct 11014 ACAAATCTGGAATCCACATGGCGTAGAACAGATCACGGGCACGCATTTCTTCCTTTCCGT 10955 Query 48277 TATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTG 48336 ||| | || | ||| | |||||| | ||||| |||||||| || |||| ||| || | Sbjct 10954 GGTTCTTCTTCAATTCCAAAAAGTCAAAAATATCCGCATGCCAAGGCTCTACATAAATGG 10895 Query 48337 CCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAA 48396 | | ||| ||| || ||||||||||| | || | || || | ||| | | Sbjct 10894 CAAAACTTCCTTTTCGCTTCCCGCCTCCTTGATCAACGTAGCGTGCCGTGTCATTAAATA 10835 Query 48397 CTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCAC 48456 | |||| ||| |||||||||||||| || |||||||||| || | ||||| ||| Sbjct 10834 CCCTTAGCATAGGGACAATACCATTGGAAGTACCATTGGTACCGGCTATATATGATCCCG 10775 Query 48457 TAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCAC 48516 |||| | | ||| ||| |||| || || || || || || || ||| || Sbjct 10774 TAGCCCGAACATTGTGAATGGAAAGTCCGATTCCCCCCGCAGATTGGGAGATTTTCGCGG 10715 Query 48517 ACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAAC 48576 | | || | ||| || ||||| || || ||||| || || |||| ||||| || | Sbjct 10714 TCTGCTTCAAGGTGTCGTAAATACCATCGATACTGTCGTCCTTCATGGCCAATAGGAAGC 10655 Query 48577 AACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAA 48636 | ||||| ||||| | ||||| || || || | || || | |||||| | | Sbjct 10654 AGGAGGACATCTGCGGCTTGGGCGTTCCGGAGTTGAAGAGGGTAGGTGTTGCATGGGTGA 10595 Query 48637 ACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGA--TG 48694 | |||| | ||| | || | ||| ||||| || |||| || |||| |||| | || Sbjct 10594 AATATTTTTTTGACATCAGCTCATAGGTTTCTATGGCAGAGTCCATAT--CATTTAAGTG 10537 Query 48695 TATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTAT 48754 || || | | || ||||| ||||||| || || | ||| | || || || | Sbjct 10536 GATTCCAACCGCAACGCGCATCAACATATGCTGGGGCCGTTCGGCTATCTTCCCGTTCAG 10477 Query 48755 TTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 || | ||||| ||| ||||| || || || || || || | |||| ||| || Sbjct 10476 CTTAAGGAGATAGGATCGCTCCAAGGTCTTGAAGCCGAAGTAATCGTATCCAAAATC 10420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561078103251600