Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq303 399 2e-106 seq13327 347 1e-90 >seq303 Length=42796 Score = 399 bits (442), Expect = 2e-106 Identities = 682/983 (69%), Gaps = 12/983 (1%) Strand=Plus/Minus Query 9851 TTTGTTTTTGTGGGTTGGTCTGGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGT 9910 ||| | ||||| || || || ||| || | |||||||| || |||||| | || | || Sbjct 27674 TTTATATTTGTTGGCTGATCCGGATTATTGCTTTTTCCGACCGCTTATTTGGCGGTCGGA 27615 Query 9911 GGCTGGCTTACTGGCACTACGTTTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGT 9970 || || || || ||||| || || || |||||||| |||| || || ||| ||| Sbjct 27614 GGATGATTTGTGGGTACTACTTTCGTAACAAGTTGGTATTCTCATGGTCTAGCATCTAGC 27555 Query 9971 TACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGT 10030 || || || ||| |||||| | || || ||||| || ||||| ||| || ||||| Sbjct 27554 TATCTAGAAGGTTGTAATTTTTTAACTGCTGCTGTATCCACGCCGGCTAATTGCATGGGG 27495 Query 10031 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGG-ATCCA 10089 || || ||| | ||| ||| ||||| || |||||||| ||| || ||| ||| | Sbjct 27494 CACTCGCTTTTATTACCTTGAGGTCCCGAAGCTCAGGGACTTTTAACTCGATGGTATCAA 27435 Query 10090 GCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTAT 10149 | |||| || | || |||| | || | || || |||| | || || ||| Sbjct 27434 G-TTGGAGGTTTATGAAATTTTATCGCCTTTCATGGGACCTTAGGGTTGGCAGGATTTTG 27376 Query 10150 GTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTT 10209 ||| | || ||||| | || || ||| | | || || || ||||| || || || Sbjct 27375 TTTAAGACAATTTGAAATTGCAAGGTTAGTGCAGGTTCGTCCATATAATGCAATTGCTTT 27316 Query 10210 TTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAG 10269 | || || ||||| |||||||| ||| || | || ||||| | || || | || Sbjct 27315 CACCGGTCCAATTGCAGTTTTTGTATCTGTCTTTTTAATTTATCCTTTAGGTCAAGCGAG 27256 Query 10270 TTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCA 10329 ||| || ||||| || ||||| || || || || ||||| | || | || ||| | || Sbjct 27255 TTGATTTTTTGCACCAAGTTTTGGAGTGGCTGCCATTTTTAGATTTTTACTATTCTTTCA 27196 Query 10330 GGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGG 10389 || |||||||| || || || ||||| |||||||||||||| || || ||||| | || Sbjct 27195 AGGGTTTCATAACTGAACACTGAATCCTTTCCATATGATGGGTGTCGCAGGTATTTTAGG 27136 Query 10390 AGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGG 10449 ||| ||| | | || || ||||| |||| |||||| |||| || | ||| ||||||| Sbjct 27135 AGGTGCGTTATTGTCTGCCATCCATGGAGCGACTGTACAAAATACCTTATATAAAGATGG 27076 Query 10450 CGAACAAGCAAACACTTTCAAAGCTTTTGATAGC---ACTCAAGAAGAAGAGACCTATTC 10506 | |||| || ||||| |||| || ||| ||||||||| ||||| Sbjct 27075 TGTGTCGTATGACACCTTTCGTGCTTT---TAGCCCAACGCAATTAGAAGAGACTTATTC 27019 Query 10507 GATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACG 10566 ||||| || || || ||||| || || ||||| |||||| | |||||| || || || Sbjct 27018 AATGGTAACCGCAAATCGTTTTTGATCTCAGATTTTTGGAGTAGCTTTTTCTAACAAGCG 26959 Query 10567 CTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGG 10626 ||| | |||||||||||| | || ||||| || | || | || || ||| || |||| Sbjct 26958 TTGGTTACATTTCTTTATGTTATTCGTACCGGTAACTGGCTTATGAACTTCTGCTTTTGG 26899 Query 10627 AATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGC 10686 || ||||||| || | ||| | | || ||||||||||| ||||||||| | | || Sbjct 26898 GATGGTTGGTCTGGCCTTAAATTTAAGGGCATACGATTTTGTGTCTCAAGAGTTACGAGC 26839 Query 10687 GTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCT 10746 | |||||||||||||| || ||||| ||||| || ||||| | || || ||||| | Sbjct 26838 AGCCGAAGATCCTGAATTCGAAACGTTTTATACCAAAAATATATTGCTTAATGAAGGAAT 26779 Query 10747 TCGTGCATGGATGGC--ACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAA 10804 ||||| || ||||| ||| |||||||| || |||| || |||||||||| ||| Sbjct 26778 CCGTGCTTGAATGGCTATGCAG--GACCAACCTCATGAAAATTTCATTTTCCCAGAGGAA 26721 Query 10805 GTTCTTCCTAGAGGTAATGCACT 10827 ||| | ||| | || ||||| || Sbjct 26720 GTTTTACCTCGCGGAAATGCTCT 26698 >seq13327 Length=3816 Score = 347 bits (384), Expect = 1e-90 Identities = 609/887 (69%), Gaps = 0/887 (0%) Strand=Plus/Minus Query 8338 TGCTTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCA 8397 || |||||| | || || || || || || || || || || || || || || || ||| Sbjct 2735 TGTTTCATTGCTGCTTTTGTAGCCGCACCGCCAGTAGATATTGATGGAATTCGTGAGCCA 2676 Query 8398 GTTGCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCT 8457 ||| | || ||||| | ||||| || || || ||||| || || || || || || || Sbjct 2675 GTTTCAGGCTCTCTTCTATACGGAAATAATATTATCTCAGGAGCCGTAGTACCGAGTTCA 2616 Query 8458 AACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTC 8517 || || ||||| | || || || | | || || || | | |||| || || | Sbjct 2615 AATGCTATTGGTATGCATTTGTATACGGTGTGAGATGCGATGTGTATTGAGGAATGATTG 2556 Query 8518 TACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTAT 8577 || ||||| || |||||||| | || || | || ||| | | || || | ||| Sbjct 2555 TATAACGGAGGACCTTACCAATTCGTTGTACTACATTTCTTAATCGGGGTAGCATCATAT 2496 Query 8578 ATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCA 8637 | |||||||| || ||| | |||||| | || ||||||||||| || | || || Sbjct 2495 CTTGGTCGTGAGTGAGAATTAAGTTACCGTTTAGGAATGCGTCCTTGAATTTTCGTAGCT 2436 Query 8638 TACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGT 8697 | |||||| || ||||| || || || |||||||| || || || || | || ||||| Sbjct 2435 TTCTCTGCACCAGTTGCAGCAGCATCGGCTGTATTTCTAGTTTACCCAATCGGACAAGGA 2376 Query 8698 TCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTC 8757 || || || ||||| |||||||| || || || || || ||||||| ||||| || ||| Sbjct 2375 TCTTTTTCAGATGGAATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGCTAGTATTC 2316 Query 8758 CAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTC 8817 ||||| ||||| || ||| | |||||||| ||||||||| ||| || || || || || Sbjct 2315 CAGGCAGAGCATAATATCTTAATGCACCCTTTCCACATGGCTGGAGTGGCAGGAGTATTT 2256 Query 8818 GGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAG 8877 || |||||| | ||| || |||||||| || | ||||| || | | || | | Sbjct 2255 GGAGGATCTTTATTTAGTGCTATGCATGGATCTTTAGTTACATCAACTTTAATTTCTATG 2196 Query 8878 ACCACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTAC 8937 || | ||| || || | || ||||| || || ||||| || ||| | ||||| || Sbjct 2195 ACTAGTGAAGATGAATCACCTAATTATGGGTATAAATTCGGACAGGAATATGAAACATAT 2136 Query 8938 AACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAAC 8997 || || || ||||| || || ||||| || || | ||||| |||| ||| |||||| Sbjct 2135 AATATCGTAGCCGCGCACGGATACTTCGGGCGTCTAATCTTTCAATTCGCAAGTTTTAAT 2076 Query 8998 AATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACC 9057 || || | || || |||||||| || || || || || |||||||| || || Sbjct 2075 AACTCACGTTCTTTACACTTCTTCCTTGCAATTTGACCGGTAGTTGGAATCTGATTAACA 2016 Query 9058 GCCCTCGGCGTCTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATT 9117 || | || | || ||||||||||| || ||||| ||||| |||||||| || || Sbjct 2015 GCAATGGGAATTAGTACTATGGCTTTCAATCTAAATGGATTCAATTTCAACCAATCAATC 1956 Query 9118 ATCGACGGACAAGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTC 9177 || || | | ||||||| || | | || || || | | || || ||| || Sbjct 1955 ATTGATGCAGAAGGACGTGTAATTTCGAGTTGAGCCGATATCTTAAATCGTGCAAATCTA 1896 Query 9178 GGTATGGAAGTCATGCACGAAAGAAACGCACACAACTTCCCGCTTGA 9224 || |||||||| ||||| || | ||||| ||||| ||||| || || Sbjct 1895 GGAATGGAAGTAATGCATGAGCGTAACGCGCACAATTTCCCTCTAGA 1849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515532969360000