Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq52741 109 4e-18 seq37644 86.0 4e-11 >seq52741 Length=4446 Score = 109 bits (120), Expect = 4e-18 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 474669 TTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAG 474728 ||||| ||||||| | || |||||| | |||||| ||| | ||||| || | Sbjct 1799 TTTCTGCAATGGTCCTTCAAAAGATGAAAAAGACCGCGGAGGATTATTTGGGACAGGACG 1740 Query 474729 TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTA 474788 | | | || || ||||| || || || |||||||||||| | ||||| |||||||| | Sbjct 1739 TTTCAAAGGCCGTTATTACGGTACCGGCCTATTTTAATGATGCACAACGCCAAGCAACCA 1680 Query 474789 AAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAG 474848 | || || || |||||| || |||| || ||||||||| |||||||| || |||| Sbjct 1679 AGGAGGCAGGGGAAATTGCTGGACTTACCGTAGAACGTATTATCAATGAACCGACTGCAG 1620 Query 474849 CCGCACTTGCTTATGGTCTTGATAAGAA 474876 | | | |||||||| || ||||| || Sbjct 1619 CATCCTTGGCTTATGGGCTGGATAAAAA 1592 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 290825 AGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCT 290884 || ||||| | || || ||||| || |||||||| ||||| | | ||| ||| || Sbjct 1601 AGCCCATAAGCCAAGGATGCTGCAGTCGGTTCATTGATAATACGTTCTACGGTAAGTCCA 1660 Query 290885 GCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACT 290944 ||||||| | | || ||||| |||||||| |||||||||||||| || || || Sbjct 1661 GCAATTTCCCCTGCCTCCTTGGTTGCTTGGCGTTGTGCATCATTAAAATAGGCCGGTACC 1720 Query 290945 GTAATAACAGCTTTTTCCACTTTCTTTTTCAAATAAT 290981 |||||||| || ||| || | || | |||||||| Sbjct 1721 GTAATAACGGCCTTTGAAACGTCCTGTCCCAAATAAT 1757 >seq37644 Length=6317 Score = 86.0 bits (94), Expect = 4e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 480590 AACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACG 480649 || ||| || || | ||||||| ||| ||||||||||| || || || ||||| | Sbjct 4514 AATATTGTAGTCGGAGAGAGTTCGCCCATCCTCAAGTTGCTTGCCTGCGAAGATAAGTCT 4455 Query 480650 TTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGT 480709 || |||||||| || | ||||| ||||||||||| |||| ||| || |||||||| | Sbjct 4454 CTGCTGATCAGGCGGGGTCCCTTCTTTGTCTTGAATTTTTTCTTTCACCGCTTCAATTGA 4395 Query 480710 ATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | || | || | || | || || ||||| ||||| || ||| |||| || Sbjct 4394 GTCGGAAGGTTCAACATCTAAAGTGACCGTCTTCCCGGTCAGAGTTTTTACGTAAATCTG 4335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3261886954160120