Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq13327 347 4e-91 >seq13327 Length=3816 Score = 347 bits (384), Expect = 4e-91 Identities = 609/886 (69%), Gaps = 8/886 (1%) Strand=Plus/Plus Query 17835 GCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTA 17894 ||||||||||| ||||| || || || |||||||| ||||| ||||| | || || || Sbjct 1843 GCTAAATCTAGAGGGAAATTGTGCGCGTTACGCTCATGCATTACTTCCATTCCTAGATTT 1902 Query 17895 GCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGAT 17954 || | || | | || || || | | | || ||||| | || | | || ||| Sbjct 1903 GCACGATTTAAGATATCGGCTCAACTCGAAATTACACGTCCTTCTGCATCAATGATTGAT 1962 Query 17955 TGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 18014 |||||||| ||||||||||| ||||| ||||||||||| |||||||| | || | Sbjct 1963 TGGTTGAAATTGAATCCATTTAGATTGAAAGCCATAGTACTAATTCCCATTGCTGTTAAT 2022 Query 18015 CATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAG 18074 || || | | || || ||| || | |||||| |||| | | || ||||| Sbjct 2023 CAGATTCCAACTACCGGTCAAATTGCAAGGAAGAAGTGTAAAGAACGTGAGTTATTAAAA 2082 Query 18075 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTC 18134 || || | || ||||| || | ||| ||||| || || || || || |||||||| || Sbjct 2083 CTTGCGAATTGAAAGATTAGACGCCCGAAGTATCCGTGCGCGGCTACGATATTATATGTT 2142 Query 18135 TCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTA 18194 || | ||| || || |||||||| ||||| || | || ||| ||| | || | Sbjct 2143 TCATATTCCTGTCCGAATTTATACCCATAATTAGGTGATTCATCTTCACTAGTCATAGAA 2202 Query 18195 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 18254 || | | || ||||| | | ||| ||||||||| ||||||| ||| || ||||| Sbjct 2203 ATTAAAGTTGATGTAACTAAAGATCCATGCATAGCACTAAATAAAGATCCTCCAAATACT 2262 Query 18255 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACG 18314 ||||| || || ||| ||||| || ||||| | |||||| || || || |||||||| Sbjct 2263 CCTGCCACTCCAGCCATGTGGAAAGGGTGCATTAAGATATTATGCTCTGCCTGGAATACT 2322 Query 18315 AACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 18374 | |||||| ||||| || || ||| || |||||||| ||||| || ||| |||||| Sbjct 2323 AGCATGAAGTTGAATGTTCCAGAAATTCCTAGAGGCATTCCATCTGAAAAAGATCCTTGT 2382 Query 18375 CCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACA 18434 || | || ||||| |||||||| | | || ||||| |||||||| || |||| || Sbjct 2383 CCGATTGGGTAAACTAGAAATACAGCCGATGCTGCTGCAACTGGTGCAGAGAAAGCTACG 2442 Query 18435 CAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCT 18494 |||| || || ||||| |||| | ||||| | ||| || | || || | || | | Sbjct 2443 AAAATTCAAGGACGCATTCCTAAACGGTAACTTAATTCTCACTCACGACCAAGATATGAT 2502 Query 18495 GCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCAC 18554 || | ||||| | || || | |||| || ||| || |||||||||||||| || || Sbjct 2503 GCTACCCCGATTAAGAAATGTAGTACAACGAATTGGTAAGGTCCTCCGTTATACAATCAT 2562 Query 18555 TCGTCGAGGGTTGCA----GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 18610 || || | | || || || || | | || || || | ||| || || || || Sbjct 2563 TCCTCAA----TACACATCGCATCTCACACCGTATACAAATGCATACCAATAGCATTTGA 2618 Query 18611 TGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGG 18670 ||| || | || ||||| || || || ||||| || || | | ||||| || || Sbjct 2619 ACTCGGTACTACGGCTCCTGAGATAATATTATTTCCGTATAGAAGAGAGCCTGAAACTGG 2678 Query 18671 CTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCA 18716 ||||||||| ||||| || || || || || || || ||||| ||| Sbjct 2679 CTCACGAATTCCATCAATATCTACTGGCGGTGCGGCTACAAAAGCA 2724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151054811858860