Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq13327 379 3e-100 seq303 343 2e-89 seq5591 86.0 8e-12 seq4610 82.4 1e-10 >seq13327 Length=3816 Score = 379 bits (420), Expect = 3e-100 Identities = 654/957 (68%), Gaps = 2/957 (0%) Strand=Plus/Plus Query 103181 TCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGACCAGCGCGG 103240 || || ||||| ||||| ||||||||||| ||||| |||||||| || ||| || || Sbjct 1849 TCTAGAGGGAAATTGTGCGCGTTACGCTCATGCATTACTTCCATTCCTAGATTTGCACGA 1908 Query 103241 TTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGACTGGTTG 103300 || | | || || || | | ||||| || | |||||| ||| || |||||| Sbjct 1909 TTTAAGATATCGGCTCAACTCGAAATTACACGTCCTTCTGCATCAATGATTGATTGGTTG 1968 Query 103301 AAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAACCAGATA 103360 || |||||||| || || ||||| ||||| || |||| || | ||| || || ||||| Sbjct 1969 AAATTGAATCCATTTAGATTGAAAGCCATAGTACTAATTCCCATTGCTGTTAATCAGATT 2028 Query 103361 CCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAATGATGCG 103420 || ||||| || | ||||| || || |||| Sbjct 2029 CCAACTACCGGTCAAATTGCAAGGAAGAAGTGTAAAGAACGTGAGTTATTAAAACTTGCG 2088 Query 103421 TATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCC 103480 |||| ||||| | ||| |||||||| || || ||||||||||| || ||||| || | Sbjct 2089 AATTGAAAGATTAGACGCCCGAAGTATCCGTGCGCGGCTACGATATTATATGTTTCATAT 2148 Query 103481 TCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCACGAACCAGC 103540 || |||||||| || || ||||| || | |||||| |||| | ||| | || | Sbjct 2149 TCCTGTCCGAATTTATACCCATAATTAGGTGATTCATCTTCACTAGTCATAGAAATTAAA 2208 Query 103541 GAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCA 103600 | || ||||| | || || ||||||||||| || | || || || || ||||| || Sbjct 2209 GTTGATGTAACTAAAGATCCATGCATAGCACTAAATAAAGATCCTCCAAATACTCCTGCC 2268 Query 103601 ACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATG 103660 || || ||||||||| |||||||| | || ||||| || || ||||| || |||||| Sbjct 2269 ACTCCAGCCATGTGGAAAGGGTGCATTAAGATATTATGCTCTGCCTGGAATACTAGCATG 2328 Query 103661 TAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAG 103720 ||||||| ||||| ||||| || | |||||| |||| || || || ||||| || | Sbjct 2329 AAGTTGAATGTTCCAGAAATTCCTAGAGGCATTCCATCTGAAAAAGATCCTTGTCCGATT 2388 Query 103721 GGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATC 103780 ||||| || | ||||| || || || || ||||| || |||||| | || || | || Sbjct 2389 GGGTAAACTAGAAATACAGCCGATGCTGCTGCAACTGGTGCAGAGAAAGCTACGAAAATT 2448 Query 103781 CAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAGATG 103840 || || ||||| || | |||||| ||||| |||||||| || | ||||| | Sbjct 2449 CAAGGACGCATTCCTAAACGGTAACTTAATTCTCACTCACGACCAAGATATGATGCTACC 2508 Query 103841 CCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCA 103900 || || | ||| || | ||| || | |||| |||| || |||||||||| || || ||| Sbjct 2509 CCGATTAAGAAATGTAGTACAACGAATTGGTAAGGTCCTCCGTTATACAATCATTCCTCA 2568 Query 103901 AGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACA 103960 | | | || || || | | ||| || || | |||||| || || || || || Sbjct 2569 ATACACATCGCATCTCACACCGTATACAAATGCATACCAATAGCATTTGAACTCGGTACT 2628 Query 103961 ACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATG 104020 || || || ||||| || || || ||||| | || || || | || || |||||||| Sbjct 2629 ACGGCTCCTGAGATAATATTATTTCCGTATAGAAGAGAGCCTGAAACTGGCTCACGAATT 2688 Query 104021 CCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAAGCA-GATGGTTGCCGC 104079 || || ||||| || || ||||| ||||| |||||| | ||||| || ||| ||| Sbjct 2689 CCATCAATATCTACTGGCGGTGCGGCTACAAAAGCAGCAATGAAACACGAT-ACTGCTAA 2747 Query 104080 CAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGTTTGT 104136 || | ||||| | ||| | | || ||||| || | ||| |||||| || ||| Sbjct 2748 TAATAACGTTGGCACCATTAATAATCCAAACCATCCGATATATAGACGGCGGTCTGT 2804 >seq303 Length=42796 Score = 343 bits (380), Expect = 2e-89 Identities = 669/981 (68%), Gaps = 8/981 (1%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 ||||| || || | || || || || || || || | || |||||||| ||||| || Sbjct 26698 AGAGCATTTCCGCGAGGTAAAACTTCCTCTGGGAAAATGAAATTTTCATGAGGTTGGTC- 26756 Query 101770 ACTGGT--GCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACG 101827 ||| |||| || ||||| | |||||||| | | || || || || || |||| Sbjct 26757 -CTGCATAGCCATTCAAGCACGGATTCCTTCATTAAGCAATATATTTTTGGTATAAAACG 26815 Query 101828 TCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAA 101887 | ||||| || |||||||| ||||||| | |||||| || ||||| || || || | | Sbjct 26816 TTTCGAATTCAGGATCTTCGGCTGCTCGTAACTCTTGAGACACAAAATCGTATGCCCTTA 26875 Query 101888 GGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAA 101947 || | || ||||||| || || | | | || || | || | || || || | Sbjct 26876 AATTTAAGGCCAGACCAACCATCCCAAAAGCAGAAGTTCATAAGCCAGTTACCGGTACGA 26935 Query 101948 AGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACC 102007 | | |||||||||||| ||||| | ||| ||| ||| || | ||||| || ||||| | Sbjct 26936 ATAACATAAAGAAATGTAACCAACGCTTGTTAGAAAAAGCTACTCCAAAAATCTGAGATC 26995 Query 102008 AGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTT 102067 | ||||| ||||| || |||||||||||||||||||| ||| || | || || Sbjct 26996 AAAAACGATTTGCGGTTACCATTGAATAAGTCTCTTCTAATTGCGTTGGGCTAAAAGCAC 27055 Query 102068 TGAAAGTGTT-TGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGG 102126 || |||| | | | ||||||||| ||| | || || | ||||| | || ||| Sbjct 27056 GAAAGGTGTCATACGACA-CACCATCTTTATATAAGGTATTTTGTACAGTCGCTCCATGG 27114 Query 102127 ATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTG 102186 || || |||| | || ||||| | |||||||| ||||||||||||||||| || || Sbjct 27115 ATGGCAGACAATAACGCACCTCCTAAAATACCTGCGACACCCATCATATGGAAAGGATTC 27174 Query 102187 AGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCA 102246 || || |||||||| || || || | ||| |||| |||||||| || || || || ||| Sbjct 27175 AGTGTTCAGTTATGAAACCCTTGAAAGAATAGTAAAAATCTAAAAATGGCAGCCACTCCA 27234 Query 102247 AACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACA 102306 || || ||||| || ||||| | || || | |||||| || | ||| ||| ||| Sbjct 27235 AAACTTGGTGCAAAAAATCAACTCGCTTGACCTAAAGGATAAATTAAAAAGACAGATACA 27294 Query 102307 AAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTA 102366 ||||| || || || || | ||| ||||| ||||| || ||||||| | |||||| Sbjct 27295 AAAACTGCAATTGGACCGGTGAAAGCAATTGCATTATATGGACGAACCTGCACTAACCTT 27354 Query 102367 GCCAACTCGAATTGAC-GAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCAC 102425 || | || ||||| | || || || || | | || | || || | || | Sbjct 27355 GCAATTTCAAATTGTCTTAAACA-AAATCCTGCCAACCCTAAGGTCCCATGAAAGGCGAT 27413 Query 102426 AAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACC 102485 |||| || | || |||| ||| ||| | ||| ||| |||||||| ||||| Sbjct 27414 AAAATTTCATAAACCTCCAACTTGATACCATCGAGTTAAAAGTCCCTGAGCTTCGGGACC 27473 Query 102486 CCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAG 102545 ||| ||| | ||| || || ||||| | | ||| ||||| || |||||||| || | Sbjct 27474 TCAAGGTAATAAAAGCGAGTGCCCCATGCAATTAGCCGGCGTGGATACAGCAGCAGTTAA 27533 Query 102546 GAAATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAA 102605 |||||| |||||| || || ||||| || || || || | |||||| || | || Sbjct 27534 AAAATTACAACCTTCTAGATAGCTAGATGCTAGACCATGAGAATACCAACTTGTTACGAA 27593 Query 102606 CGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCC 102665 || || || || || || || | || | |||||| || |||||||| | || ||| Sbjct 27594 AGTAGTACCCACAAATCATCCTCCGACCGCCAAATAAGCGGTCGGAAAAAGCAATAATCC 27653 Query 102666 AGACCAACCCACAAAGACAAA 102686 || || || ||||| | ||| Sbjct 27654 GGATCAGCCAACAAATATAAA 27674 >seq5591 Length=63835 Score = 86.0 bits (94), Expect = 8e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 74816 GGACTTGAACCTCCACGGATAAATCCACTGGAACCTAAACCCAGCGCGTCTACCAATTCC 74875 ||||| ||||| |||||||| | |||||||| ||||||| ||||||||||||||| |||| Sbjct 49805 GGACTCGAACCCCCACGGATCACTCCACTGGTACCTAAAACCAGCGCGTCTACCAGTTCC 49746 Query 74876 GCCAC 74880 ||||| Sbjct 49745 GCCAC 49741 >seq4610 Length=4342 Score = 82.4 bits (90), Expect = 1e-10 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 74130 GTGGAGAATAGGAGACTCGAACTCCTGACATCCTGCTTGCAAAGCAGGCGCTCTA-CCAG 74188 |||||||||| || |||||| |||| |||||| ||||| |||||||||||| |||| Sbjct 2221 GTGGAGAATATCGGAGTCGAACCGATGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAG 2162 Query 74189 CTGAGCTAATTCCCC 74203 ||||||||||||||| Sbjct 2161 CTGAGCTAATTCCCC 2147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632351973625200