Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq13327 428 5e-115 seq303 280 2e-70 >seq13327 Length=3816 Score = 428 bits (474), Expect = 5e-115 Identities = 663/947 (70%), Gaps = 0/947 (0%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 |||| ||||| ||||| ||||| || || | |||||||| |||||||| || | ||| Sbjct 1843 GCTAAATCTAGAGGGAAATTGTGCGCGTTACGCTCATGCATTACTTCCATTCCTAGATTT 1902 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | |||| | ||| | || | | | | ||| | ||||||| | |||| Sbjct 1903 GCACGATTTAAGATATCGGCTCAACTCGAAATTACACGTCCTTCTGCATCAATGATTGAT 1962 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| || ||||| ||||| | ||||| ||||| || | || ||||| | ||||| Sbjct 1963 TGGTTGAAATTGAATCCATTTAGATTGAAAGCCATAGTACTAATTCCCATTGCTGTTAAT 2022 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAT 124288 || | | || || || ||| ||| ||||||||||| | | | |||||| || || Sbjct 2023 CAGATTCCAACTACCGGTCAAATTGCAAGGAAGAAGTGTAAAGAACGTGAGTTATTAAAA 2082 Query 124289 GAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTT 124348 || | || ||||| ||||| || ||||| ||||| || ||||| || || |||||| Sbjct 2083 CTTGCGAATTGAAAGATTAGACGCCCGAAGTATCCGTGCGCGGCTACGATATTATATGTT 2142 Query 124349 TCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTG 124408 || | ||| |||||||| ||||| ||||| || |||| || | || | || Sbjct 2143 TCATATTCCTGTCCGAATTTATACCCATAATTAGGTGATTCATCTTCACTAGTCATAGAA 2202 Query 124409 ATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATT 124468 |||| || |||||||| | ||| |||||||| || |||||||||||||| || | | Sbjct 2203 ATTAAAGTTGATGTAACTAAAGATCCATGCATAGCACTAAATAAAGATCCTCCAAATACT 2262 Query 124469 CCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACG 124528 ||||| ||||| |||||||||||||| ||||||| || ||||||||||| ||||| || Sbjct 2263 CCTGCCACTCCAGCCATGTGGAAAGGGTGCATTAAGATATTATGCTCTGCCTGGAATACT 2322 Query 124529 AACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGA 124588 | ||| |||||||| || || || || || || ||||| ||||| || || || || || Sbjct 2323 AGCATGAAGTTGAATGTTCCAGAAATTCCTAGAGGCATTCCATCTGAAAAAGATCCTTGT 2382 Query 124589 CCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACA 124648 || | |||||| |||| |||||||| |||| || | |||||||| || |||| || Sbjct 2383 CCGATTGGGTAAACTAGAAATACAGCCGATGCTGCTGCAACTGGTGCAGAGAAAGCTACG 2442 Query 124649 CAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCT 124708 | || ||||||||||||||||| | ||| || ||| |||| | || | |||| | Sbjct 2443 AAAATTCAAGGACGCATTCCTAAACGGTAACTTAATTCTCACTCACGACCAAGATATGAT 2502 Query 124709 GAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCAT 124768 | | || || | ||| || | | || || || ||||| || || |||||||| ||| Sbjct 2503 GCTACCCCGATTAAGAAATGTAGTACAACGAATTGGTAAGGTCCTCCGTTATACAATCAT 2562 Query 124769 TCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGAT 124828 || |||| | || || || | | || || || | || ||||| ||||| Sbjct 2563 TCCTCAATACACATCGCATCTCACACCGTATACAAATGCATACCAATAGCATTTGAACTC 2622 Query 124829 GGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCT 124888 || || || || || ||||| || || || || |||| | ||| || | ||||| || Sbjct 2623 GGTACTACGGCTCCTGAGATAATATTATTTCCGTATAGAAGAGAGCCTGAAACTGGCTCA 2682 Query 124889 CTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAAACATGCTGCT 124948 | ||||| || ||||| || || ||||| || | ||| ||| | |||||||| | | || Sbjct 2683 CGAATTCCATCAATATCTACTGGCGGTGCGGCTACAAAAGCAGCAATGAAACACGATACT 2742 Query 124949 GCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATA 124995 ||| | ||| ||| | ||||| | |||||||| || | ||| Sbjct 2743 GCTAATAATAACGTTGGCACCATTAATAATCCAAACCATCCGATATA 2789 >seq303 Length=42796 Score = 280 bits (310), Expect = 2e-70 Identities = 636/951 (67%), Gaps = 29/951 (3%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 ||| || || || || | ||||| ||||| |||||||| | ||||| ||||| ||||| Sbjct 26694 TTAGAGAGCATTTCCGCGAGGTAAAACTTCCTCTGGGAAAATGAAATTTTCATGAGGTTG 26753 Query 122926 GTCAA-CAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGA 122984 ||| || | | ||| || || | || ||||||||||| | || || || ||||| | Sbjct 26754 GTCCTGCATA-GCCATTCAAGCACGGATTCCTTCATTAAGCAATATATTTTTGGTATAAA 26812 Query 122985 AAGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTC 123044 | || ||||| || || ||||| ||||||| || ||||||||| ||||| |||||||| | Sbjct 26813 ACGTTTCGAATTCAGGATCTTCGGCTGCTCGTAACTCTTGAGACACAAAATCGTATGCCC 26872 Query 123045 TGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAA 123104 | | || | || ||||| || || || | || || || || | || | || || | Sbjct 26873 TTAAATTTAAGGCCAGACCAACCATCCCAAAAGCAGAAGTTCATAAGCCAGTTACCGGTA 26932 Query 123105 CGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTG 123164 |||| ||||||| ||| ||||| | | ||||||||||| || | ||||| ||||| | Sbjct 26933 CGAATAACATAAAGAAATGTAACCAACGCTTGTTAGAAAAAGCTACTCCAAAAATCTGAG 26992 Query 123165 ACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATG 123224 | || || | || || || | ||| |||||| |||||| || || || || | Sbjct 26993 ATCAAAAACGATTTGCGGTTACCATTGAATAAGTCTCTTCTAATTGCGTTGGGCTAAAAG 27052 Query 123225 CTCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATG 123284 | | ||||| ||| || | ||| |||| ||| || | Sbjct 27053 CAC-GAAAGGTGTCATACGA--CACACC------------------ATCTTTATATAAGG 27091 Query 123285 TGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAA 123344 | || || || || || ||||| |||||| | | ||| || || |||| || ||||| | Sbjct 27092 TATTTTGTACAGTCGCTCCATGGATGGCAGACAATAACGCACCTCCTAAAATACCTGCGA 27151 Query 123345 CACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATAT 123404 |||||||||| || || ||||||| ||| ||| || || ||||| | ||||| | | Sbjct 27152 CACCCATCATATGGAAAGGATTCAGTGTTCAGTTATGAAACCCTTGAAAGAATAGTAAAA 27211 Query 123405 AACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTG 123464 | | ||| || || || || || || |||||| || || ||||| ||||||| | Sbjct 27212 ATCTAAAAATGGCAGCCACTCCAAAACTTGGTGCAAAAAATCAACTCGCTTGACCTAAAG 27271 Query 123465 GATAGATCAGAAAGA-TGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTG 123523 |||| || | ||||| | || || ||||| || | | | ||| || | ||| || Sbjct 27272 GATAAATTAAAAAGACAGATA-CAAAAACTGCAATTGGACCGGTGAAAGCAATTGCATTA 27330 Query 123524 TAAGGTCTAA--TGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGA 123581 || || | || ||| || | | ||| || ||||||||||| | || ||| | Sbjct 27331 TATGGACGAACCTGC--ACTAACCTTGCAATTTCAAATTGTCTTAAACAAAATCCTGCCA 27388 Query 123582 GTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAA 123641 || ||| ||||| || || | ||| || |||| |||||| | ||| |||| ||| Sbjct 27389 ACCCTAAGGTCCCATGAAAGGCGATAAAATTTCATAAACCTCCAACTTGATACCATCGAG 27448 Query 123642 CGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCAC 123701 || ||| || ||||| || || ||| | || | || || ||||| | | Sbjct 27449 TTAAAAGTCCCTGAGCTTCGGGACCTCAAGGTAATAAAAGCGAGTGCCCCATGCAATTAG 27508 Query 123702 CAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATAC 123761 | || ||||| || || || ||||| || || || || ||||| |||||| | || Sbjct 27509 CCGGCGTGGATACAGCAGCAGTTAAAAAATTACAACCTTCTAGATAGCTAGATGCTAGAC 27568 Query 123762 CATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGA 123812 |||| | |||||| ||| ||||| ||||| || | || || || |||| Sbjct 27569 CATGAGAATACCAACTTGTTACGAAAGTAGTACCCACAAATCATCCTCCGA 27619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577936734058800