Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq13327 423 3e-113 seq303 324 2e-83 seq49863 208 1e-48 seq4620 150 2e-31 seq4610 89.7 7e-13 >seq13327 Length=3816 Score = 423 bits (468), Expect = 3e-113 Identities = 661/943 (70%), Gaps = 2/943 (0%) Strand=Plus/Plus Query 26746 GGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACGGTTGAGA 26805 || ||||| || ||||| | || || || || || | ||| ||| ||||| || | Sbjct 1855 GGGAAATTGTGCGCGTTACGCTCATGCATTACTTCCATTCCTAGATTTGCACGATTTAAG 1914 Query 26806 ACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTGAAGTTG 26865 | || || ||| | | ||||| || | || |||||| | || || ||||| ||| Sbjct 1915 ATATCGGCTCAACTCGAAATTACACGTCCTTCTGCATCAATGATTGATTGGTTGAAATTG 1974 Query 26866 AAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACA 26925 || || || |||||||||||||| || | || | ||| || || ||||| ||||| Sbjct 1975 AATCCATTTAGATTGAAAGCCATAGTACTAATTCCCATTGCTGTTAATCAGATTCCAACT 2034 Query 26926 ACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGG 26985 || || || |||||||||||||| || ||||||||||| || || || |||| Sbjct 2035 ACCGGTCAAATTGCAAGGAAGAAGTGTAAAGAACGTGAGTTATTAAAACTTGCGAATTGA 2094 Query 26986 AAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGA 27045 ||||| | ||| |||||||| || || || || ||||| || || || || | ||| || Sbjct 2095 AAGATTAGACGCCCGAAGTATCCGTGCGCGGCTACGATATTATATGTTTCATATTCCTGT 2154 Query 27046 CCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGAT 27105 ||||| ||||| ||||| || |||| ||| |||| | ||| | | | | ||| Sbjct 2155 CCGAATTTATACCCATAATTAGGTGATTCATCTTCACTAGTCATAGAAATTAAAGTTGAT 2214 Query 27106 GTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCG 27165 ||||| | | ||| ||||||||| || | |||||| || ||||| || || || || Sbjct 2215 GTAACTAAAGATCCATGCATAGCACTAAATAAAGATCCTCCAAATACTCCTGCCACTCCA 2274 Query 27166 AGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTA 27225 ||||||||| |||||||| | |||||| || |||||||||||||| |||||| |||| Sbjct 2275 GCCATGTGGAAAGGGTGCATTAAGATATTATGCTCTGCCTGGAATACTAGCATGAAGTTG 2334 Query 27226 AAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAG 27285 || || ||||| || || |||||||| |||| || ||||| ||||| |||| || || Sbjct 2335 AATGTTCCAGAAATTCCTAGAGGCATTCCATCTGAAAAAGATCCTTGTCCGATTGGGTAA 2394 Query 27286 ACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGA 27345 || || ||||| || || || || ||||| ||||| | ||||| | || || ||| Sbjct 2395 ACTAGAAATACAGCCGATGCTGCTGCAACTGGTGCAGAGAAAGCTACGAAAATTCAAGGA 2454 Query 27346 CGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAGATGCCGATA 27405 ||||| |||||||| || | ||| |||||||| || | ||| | | ||||| Sbjct 2455 CGCATTCCTAAACGGTAACTTAATTCTCACTCACGACCAAGATATGATGCTACCCCGATT 2514 Query 27406 AGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGAT 27465 | ||| || | || || | |||| |||| || ||||||||||| || || || | | Sbjct 2515 AAGAAATGTAGTACAACGAATTGGTAAGGTCCTCCGTTATACAATCATTCCTCAATACAC 2574 Query 27466 GCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGCA 27525 || || || | | || || || | ||| || ||||||||||| || || || || Sbjct 2575 ATCGCATCTCACACCGTATACAAATGCATACCAATAGCATTTGAACTCGGTACTACGGCT 2634 Query 27526 CCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCA 27585 || || || || || || || || | ||| || || | ||| || |||||||| || ||| Sbjct 2635 CCTGAGATAATATTATTTCCGTATAGAAGAGAGCCTGAAACTGGCTCACGAATTCCATCA 2694 Query 27586 ATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAGCA-GACAGTTGCTGCTAACAG 27644 ||||| || || ||||| || | || || ||||||| || || | |||| ||| | Sbjct 2695 ATATCTACTGGCGGTGCGGCTACAAAAGCAGCAATGAAACACGATA-CTGCTAATAATAA 2753 Query 27645 TGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGG 27687 ||||| | ||| | || || ||||| || | ||| | |||| Sbjct 2754 CGTTGGCACCATTAATAATCCAAACCATCCGATATATAGACGG 2796 >seq303 Length=42796 Score = 324 bits (358), Expect = 2e-83 Identities = 661/979 (68%), Gaps = 10/979 (1%) Strand=Plus/Plus Query 23430 AAGTTTTCGTGTGGTTGGTCA---ATAGTCATCATCCATTCACGGAGGCCATTGTTCAAC 23486 || ||||| || |||||||| |||| ||| || |||||| || | || | | Sbjct 26737 AAATTTTCATGAGGTTGGTCCTGCATAGCCATT---CAAGCACGGATTCCTTCATTAAGC 26793 Query 23487 AAAATATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGA 23546 || |||||||| || || || || || | | |||||| || || || | ||||||| Sbjct 26794 AATATATTTTTGGTATAAAACGTTTCGAATTCAGGATCTTCGGCTGCTCGTAACTCTTGA 26853 Query 23547 CTCACAAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACC 23606 ||||||||| || || | | ||| | || || |||| || |||| || ||| Sbjct 26854 GACACAAAATCGTATGCCCTTAAATTTAAGGCCAGACCAACCATCCCAAAAGCAGAAGTT 26913 Query 23607 CAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAAC 23666 || | || | || || || || ||||||||||| || ||||||||||| || ||| Sbjct 26914 CATAAGCCAGTTACCGGTACGAATAACATAAAGAAATGTAACCAACGCTTGTTAGAAAAA 26973 Query 23667 GCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCC 23726 || || || || || || || |||||||||||||| || ||||| ||||| ||||| || Sbjct 26974 GCTACTCCAAAAATCTGAGATCAAAAACGATTTGCGGTTACCATTGAATAAGTCTCTTCT 27033 Query 23727 TCCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTA 23786 || || | || || ||| |||| | | ||||||| ||| | ||| Sbjct 27034 AATTGCGTTGGGCTAAAAGCACGAAAGGTGTCATACGACACACCATCTTTATATAAGGTA 27093 Query 23787 TTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACT 23846 || | ||||| ||||||| || ||||| | | || ||||| | ||||| || || Sbjct 27094 TTTTGTACAGTCGCTCCATGGATGGCAGACAATAACGCACCTCCTAAAATACCTGCGACA 27153 Query 23847 CCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAAC 23906 |||||||||||||| || || || || ||||||||||| || || | ||| || | || Sbjct 27154 CCCATCATATGGAAAGGATTCAGTGTTCAGTTATGAAACCCTTGAAAGAATAGTAAAAAT 27213 Query 23907 CTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGA 23966 || ||||| || || || || ||||| || ||||| || ||| | || || |||||| Sbjct 27214 CTAAAAATGGCAGCCACTCCAAAACTTGGTGCAAAAAATCAACTCGCTTGACCTAAAGGA 27273 Query 23967 TAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAG 24026 || || | || ||||| || || || ||||| ||||| | |||||||| ||||| || Sbjct 27274 TAAATTAAAAAGACAGATACAAAAACTGCAATTGGACCGGTGAAAGCAATTGCATTATAT 27333 Query 24027 GGACGGATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCA 24086 ||||| | | || | ||| | |||||| || | ||| ||| ||| | | Sbjct 27334 GGACGAACCTGCACTAACCTTGCAATTTCAAATTGTCTTAAACAAAATCCTGCCAACCCT 27393 Query 24087 AAGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACC--GTTGAA 24144 |||| || || | || | ||| || | ||||||| ||| ||| | ||| || Sbjct 27394 AAGGTCCCATGAAAGGCGATAAAATTTCATAAACCTCCAACTTGATACCATCGAGTTAAA 27453 Query 24145 AGTCCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAG 24204 |||||| |||| || ||||| ||| ||| | ||| || || ||||| | ||| | Sbjct 27454 AGTCCC--TGAGCTTCGGGACCTCAAGGTAATAAAAGCGAGTGCCCCATGCAATTAGCCG 27511 Query 24205 GCGTCGAGACAGCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCAT 24264 |||| || ||||| || || | ||| ||| ||| || |||||| | || || |||| Sbjct 27512 GCGTGGATACAGCAGCAGTTAAAAAATTACAACCTTCTAGATAGCTAGATGCTAGACCAT 27571 Query 24265 GGGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAG 24324 | | |||||||| || || |||| || || || || || || | || | ||||| Sbjct 27572 GAGAATACCAACTTGTTACGAAAGTAGTACCCACAAATCATCCTCCGACCGCCAAATAAG 27631 Query 24325 CAGTGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCC 24384 | || |||| ||| | | ||| || || || ||||| | ||| | ||| | || | Sbjct 27632 CGGTCGGAAAAAGCAATAATCCGGATCAGCCAACAAATATAAATCTTTCCTGCTTTATAA 27691 Query 24385 AGTCGTCCAAGATGTCAAA 24403 | |||||||| | ||||| Sbjct 27692 AATCGTCCAATAAATCAAA 27710 >seq49863 Length=10164 Score = 208 bits (230), Expect = 1e-48 Identities = 349/502 (70%), Gaps = 16/502 (3%) Strand=Plus/Plus Query 47785 TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCC 47844 || |||||||| || || |||| || || || ||| || || || | |||||| | Sbjct 9671 TTACCTGTGGCGATGACCCAATCTTCTGGCTCATCTGCCTGTAGGATCATCCACATCATC 9730 Query 47845 TCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAA 47904 ||||| || |||| || ||||| || || |||||| ||||| || ||||||| Sbjct 9731 CGTACATAGTCCTTGGCGTGCCCCCAATCCCGTTTTGCATCCAGATTGCCCAGATATAGT 9790 Query 47905 CAGTCTTGCTTACCTTCAGAGATTGCTTTTAAT------GCTCTTGTAATCTTACGAGTT 47958 || || ||| ||| |||| | | ||||||||||| || | ||| Sbjct 9791 TTATCCTGTAGACC--CAG----TGCTATACGTACCGCGGCTCTTGTAATTTTTCTCGTT 9844 Query 47959 ACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATAC 48018 ||||||||||| ||||| | || |||||||||||||| | ||| || | |||||| || Sbjct 9845 ACAAAAGTTTCGCCACGAATCGGCGATTCATGATTAAATAAAATTCCGTTGCAGGCAAAC 9904 Query 48019 ATTCCGTATGATTCACGATAGTT--CTTTACTATCCAGTACCCATAGAGTTTTGCAACAC 48076 || || || | ||| | |||||| | || ||||| || |||| | |||||| || Sbjct 9905 ATACCATAGGCTTCCCTATAGTTTACGGTA--ATCCAATAGGCATACATTTTTGCCACGG 9962 Query 48077 CATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTAC 48136 |||| ||| ||| ||||| ||||| |||||||||| ||| || ||| || ||||| | Sbjct 9963 CATAGGGACTACGAGGATAAAAAGGGGTGGTCTCTGACTGGGGCACCTCCTGTACCTTTC 10022 Query 48137 CATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAAAC 48196 |||| | ||| |||||||| |||||||| ||| | | ||||||| | | | | Sbjct 10023 CATATAATTCGGAAGTGGATGCCTGATAGATTCGAGTCTTGCCTTCCATACCTAAAAGTC 10082 Query 48197 GGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCA 48256 ||||||| ||||| | | || |||||| | | |||| | | || ||||| || || Sbjct 10083 GGACTGCATCAAGAATCCGCAAGGTGCCAAGGCCATCCGCGTTTCCCGTATATTCCGGTG 10142 Query 48257 TCTCAAACGAAACCTTTACATG 48278 | ||||| ||||||| ||||| Sbjct 10143 TTTCAAAAGAAACCTGGACATG 10164 Score = 98.7 bits (108), Expect = 1e-15 Identities = 264/401 (66%), Gaps = 6/401 (1%) Strand=Plus/Plus Query 46973 TTTTGCAATCATCGCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACC 47032 |||| ||||| || || || ||||| || |||| || |||||||||||||| || || Sbjct 8756 TTTTCTAATCAATGCAGGTAGTACATGAGACTTTTCCAGATCAAAATTATCATTGGGTCC 8815 Query 47033 ATATAGGTTTGTAGGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTG 47092 ||| || || || ||||| | || || ||| || || ||| || || || Sbjct 8816 ATACAGATTAGTGGGCATTACGGAAATGAAATTGGTACCGTATTGCAAATTATAGCTCTC 8875 Query 47093 ACACATCTTGATACCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGG 47152 ||| | || ||||| ||||| ||||| || || |||| ||||| | ||| || Sbjct 8876 ACATAGTTTAATACCTGCAATTTTTGCTATGGCGTAAGGCTCATTGGTGTATTCCAGCAC 8935 Query 47153 ACCACTCATTAGATATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGA 47212 | | ||| ||||| || ||| | || || || | |||||||||||||||| | Sbjct 8936 ATCGGTCAGAAGATACTCCTCCTTCATTGGCTGGGGGCTCGATTTTGGATAAATGCATGT 8995 Query 47213 AGAACCAAGAAATAAAAGTTTCTTAACACCAAACTTACG--TGC-AGAATGAATGATGTT 47269 | || | ||| | ||||| || || ||| || || || ||| || | || Sbjct 8996 ACTTCCCAAAAACATTAGTTTTTTTACGCCA---TTGCGATAGCTTTGATGGATTACATT 9052 Query 47270 TGATTGAATCATCAAATTATCATAGATGAAGTGTCCGGGATAATCCTTATTAGCACCAAT 47329 ||| ||||||| || ||||||| ||| | | | || |||||||| ||| Sbjct 9053 ATTTTGTATCATCAGGTTTTCATAGAGGAAATCCGCACGGTATGTATTATTAGCTAAAAT 9112 Query 47330 ACCACCCACCTTTGCAGCAGCAAGATAAACGTACTCAGGTT 47370 ||| || |||||||| || || | | |||| | ||||||| Sbjct 9113 ACCCCCGACCTTTGCGGCCGCCAAAAAAACCCATTCAGGTT 9153 >seq4620 Length=65515 Score = 150 bits (166), Expect = 2e-31 Identities = 350/528 (66%), Gaps = 0/528 (0%) Strand=Plus/Plus Query 47787 TCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTC 47846 ||| || |||| ||| | || || || ||| || || | ||| |||||||| | || Sbjct 48919 TCCCGTCGCAAGTACATAGTCGTCGGGCGATTCCTGCTGCATCATCAACCACATGCCTTC 48978 Query 47847 GACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACA 47906 ||||| || | ||| || ||||| || || | ||||| ||||| || ||||| | || Sbjct 48979 CACATAGTCGCGGGCGTGACCCCAATCCCGTCGGGCATCGAGATTACCGAGATAAAGGCA 49038 Query 47907 GTCTTGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGT 47966 || || ||| | | ||| || | || | || ||||| || || || ||||| Sbjct 49039 ATCCTGGCGACCGTAATGGATCGCGGCCACGGCCCGCGTGATCTTGCGGGTCACGAAAGT 49098 Query 47967 TTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTA 48026 || ||||| |||| || ||||| || || || || | | |||| || || || Sbjct 49099 CTCGCCACGGATTGGGCTCTCGTGATTGAAGAGGATGCCGTTTGAAGCATGCAGCCCATA 49158 Query 48027 TGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGA 48086 | ||| ||||||||| | |||||| |||| || || || | |||| || || Sbjct 49159 GGCTTCGCGATAGTTCACAGTGACCCAGTAAGCATACAGCTTGGCGGCGGCATAGGGCGA 49218 Query 48087 ACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTC 48146 || ||||||||||| |||||||| | ||| || || || || ||||| || || ||||| Sbjct 49219 GCGAGGATAGAAAGGCGTGGTCTCGGACTGCGGCGTTTCCTGAACCTTGCCGTAGAGTTC 49278 Query 48147 ACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTC 48206 || || || ||||||| || || | |||||| | || | || | ||||| Sbjct 49279 CGAAGTCGACGCCTGATAGAAGCGGGCCGACTTCTCCATCCCCAGAATGCGTATCGCCTC 49338 Query 48207 AAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGA 48266 |||| | || || || | ||||| | | | || ||||||| | || || Sbjct 49339 GAGCAACCGCAACGTACCCAGAGCATCGGCATTGGCGGTGTACTCGGCGGTTTCGAAACT 49398 Query 48267 AACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTG 48314 |||| ||||| || || || |||| || || |||||||| ||||| Sbjct 49399 CACCTGAACATGGCTTTGCGCAGCAAGGTTGTAGATCTCATCCGGTTG 49446 >seq4610 Length=4342 Score = 89.7 bits (98), Expect = 7e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 ||||||||| |||| |||||||| |||| |||| | ||||| |||||||||||| ||| | Sbjct 2220 TGGAGAATATCGGAGTCGAACCGATGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAGC 2161 Query 53800 TGAGCTAATTCCCC 53813 |||||||||||||| Sbjct 2160 TGAGCTAATTCCCC 2147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 664274132830800