Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq13327 425 6e-114 seq303 383 2e-101 seq4610 95.1 1e-14 >seq13327 Length=3816 Score = 425 bits (470), Expect = 6e-114 Identities = 665/949 (70%), Gaps = 2/949 (0%) Strand=Plus/Minus Query 165798 CCGTCTGTATGTCGGTTGGTTTGGTACGCTGATGATTCCAACTCTGTTGGCAGCAACTAT 165857 |||||| ||| |||| |||||||| | ||| | ||||| | || |||| ||| Sbjct 2796 CCGTCTATATATCGGATGGTTTGGATTATTAATGGTGCCAACGTTATTATTAGCAG-TAT 2738 Query 165858 C-TGCTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAAC 165916 | || ||||| | || || | || || || || || || || || || || ||||| | Sbjct 2737 CGTGTTTCATTGCTGCTTTTGTAGCCGCACCGCCAGTAGATATTGATGGAATTCGTGAGC 2678 Query 165917 CCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTT 165976 | || | || ||||| | || || || || || ||||| || || || || || || Sbjct 2677 CAGTTTCAGGCTCTCTTCTATACGGAAATAATATTATCTCAGGAGCCGTAGTACCGAGTT 2618 Query 165977 CCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGC 166036 | || || |||||| | || || ||| | | || || || | |||| ||||| Sbjct 2617 CAAATGCTATTGGTATGCATTTGTATACGGTGTGAGATGCGATGTGTATTGAGGAATGAT 2558 Query 166037 TCTATAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCT 166096 | |||||||| || |||| |||| | ||||| | || ||| | || || | | | Sbjct 2557 TGTATAACGGAGGACCTTACCAATTCGTTGTACTACATTTCTTAATCGGGGTAGCATCAT 2498 Query 166097 ACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTG 166156 | | ||||||||||| ||| | ||||||| |||| |||||||| || || | || | Sbjct 2497 ATCTTGGTCGTGAGTGAGAATTAAGTTACCGTTTAGGAATGCGTCCTTGAATTTTCGTAG 2438 Query 166157 CTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAG 166216 ||| ||| |||||||| || || || || ||||| ||||| || || |||| |||| Sbjct 2437 CTTTCTCTGCACCAGTTGCAGCAGCATCGGCTGTATTTCTAGTTTACCCAATCGGACAAG 2378 Query 166217 GTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCT 166276 | ||| || |||| |||||| || ||||| || ||||||||||||| |||| | || | Sbjct 2377 GATCTTTTTCAGATGGAATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGCTAGTAT 2318 Query 166277 TCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTAT 166336 |||| || ||||| ||||| | ||||| || ||||| ||| || || || || |||| Sbjct 2317 TCCAGGCAGAGCATAATATCTTAATGCACCCTTTCCACATGGCTGGAGTGGCAGGAGTAT 2258 Query 166337 TTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAG 166396 |||| || ||| |||||||||||||| ||| ||| ||||| || || | || Sbjct 2257 TTGGAGGATCTTTATTTAGTGCTATGCATGGATCTTTAGTTACATCAACTTTAATTTCTA 2198 Query 166397 AGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACAT 166456 ||| | |||| ||||| | || || || || || |||||||| ||| | ||||||| Sbjct 2197 TGACTAGTGAAGATGAATCACCTAATTATGGGTATAAATTCGGACAGGAATATGAAACAT 2138 Query 166457 ACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCA 166516 | || ||||||||||| || || |||||||| ||| | ||||| |||| ||| || | Sbjct 2137 ATAATATCGTAGCCGCGCACGGATACTTCGGGCGTCTAATCTTTCAATTCGCAAGTTTTA 2078 Query 166517 ACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCA 166576 | ||||| || || || |||||||||||||| || || || || || ||||| || | Sbjct 2077 ATAACTCACGTTCTTTACACTTCTTCCTTGCAATTTGACCGGTAGTTGGAATCTGATTAA 2018 Query 166577 CCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCA 166636 | || | || | || ||||| ||||| || || || ||||| |||||||| || | Sbjct 2017 CAGCAATGGGAATTAGTACTATGGCTTTCAATCTAAATGGATTCAATTTCAACCAATCAA 1958 Query 166637 TCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTC 166696 || |||||| | || ||||| | | || || ||| | | || || || || Sbjct 1957 TCATTGATGCAGAAGGACGTGTAATTTCGAGTTGAGCCGATATCTTAAATCGTGCAAATC 1898 Query 166697 TCGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCCCTCGA 166745 | || |||||||| ||||||||||||||||| ||||| ||||| || || Sbjct 1897 TAGGAATGGAAGTAATGCATGAGCGTAACGCGCACAATTTCCCTCTAGA 1849 >seq303 Length=42796 Score = 383 bits (424), Expect = 2e-101 Identities = 681/988 (69%), Gaps = 14/988 (1%) Strand=Plus/Minus Query 167050 TTTGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGC 167109 ||| | ||||||||||| || ||| | | |||||||| || |||||| | || | || Sbjct 27674 TTTATATTTGTTGGCTGATCCGGATTATTGCTTTTTCCGACCGCTTATTTGGCGGTCGGA 27615 Query 167110 GGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCGTCCAGT 167169 || || || || ||||||||||| || ||||||||| ||||||| || || || || Sbjct 27614 GGATGATTTGTGGGTACTACTTTCGTAACAAGTTGGTATTCTCATGGTCTAGCATCTAGC 27555 Query 167170 TATCTTGAGGGTGCGAACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGT 167229 ||||| || ||| || ||| | ||||| || || || || || ||| ||||| Sbjct 27554 TATCTAGAAGGTTGTAATTTTTTAACTGCTGCTGTATCCACGCCGGCTAATTGCATGGGG 27495 Query 167230 CATTC---TTTACTTCTTCTATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTC 167286 || || |||| | | | || ||||| ||| |||| || ||| | ||| Sbjct 27494 CACTCGCTTTTATTACCT---TGAGGTCCCGAAGCTCAGGGACTTTTAACTCGATGGTAT 27438 Query 167287 CAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTC 167346 ||| |||| || | || |||| | || | || || |||| | | || || Sbjct 27437 CAAGTTGGAGGTTTATGAAATTTTATCGCCTTTCATGGGACCTTAGGGTTGGCAGGATTT 27378 Query 167347 ATGCTTC-GACAGTTTGAACTTGCTCGCCTGATTGGTATCCGTCCCTACAATGCTATTGC 167405 || || |||| |||||| |||| | | | | ||||| || ||||| ||||| Sbjct 27377 -TGTTTAAGACAATTTGAAATTGCAAGGTTAGTGCAGGTTCGTCCATATAATGCAATTGC 27319 Query 167406 TTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAG 167465 |||| | ||||| ||||| || || || || || | | ||||| | |||||| Sbjct 27318 TTTCACCGGTCCAATTGCAGTTTTTGTATCTGTCTTTTTAATTTATCCTTTAGGTCAAGC 27259 Query 167466 CAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCT 167525 || || || ||||| || || ||||| || ||||| || |||| | || ||| | Sbjct 27258 GAGTTGATTTTTTGCACCAAGTTTTGGAGTGGCTGCCATTTTTAGATTTTTACTATTCTT 27199 Query 167526 CCAAGGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCT 167585 ||||| || || ||||| ||||||||||| || |||||||||||||| |||||||| | Sbjct 27198 TCAAGGGTTTCATAACTGAACACTGAATCCTTTCCATATGATGGGTGTCGCAGGTATTTT 27139 Query 167586 GGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGA 167645 || ||||| || | ||||| |||||||| | || ||| | ||||| || ||| |||| Sbjct 27138 AGGAGGTGCGTTATTGTCTGCCATCCATGGAGCGACTGTACAAAATACCTTATATAAAGA 27079 Query 167646 TGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTC 167705 ||||| | |||| ||| || || | || || ||||||||||||||| Sbjct 27078 TGGTGTGTCGTATGACACCTTTCGTGCTTTTAGCCCAACGCAATTAGAAGAGACTTATTC 27019 Query 167706 AATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACG 167765 |||||| || ||||| || || || |||||||| || || | ||||| ||||| || Sbjct 27018 AATGGTAACCGCAAATCGTTTTTGATCTCAGATTTTTGGAGTAGCTTTTTCTAACAAGCG 26959 Query 167766 CTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGG 167825 ||| | |||||||||||||||||||| || || | || | || || || | |||| Sbjct 26958 TTGGTTACATTTCTTTATGTTATTCGTACCGGTAACTGGCTTATGAACTTCTGCTTTTGG 26899 Query 167826 CATCATTGGTCTGGCTCTTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGC 167885 || |||||||||| | ||| | | || |||||||| || ||||||||| | |||| Sbjct 26898 GATGGTTGGTCTGGCCTTAAATTTAAGGGCATACGATTTTGTGTCTCAAGAGTTACGAGC 26839 Query 167886 GGCGGAGGATCCAGAGTTTGAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCT 167945 || || ||||| || || ||||| || ||||| ||||| || | || |||||||| | Sbjct 26838 AGCCGAAGATCCTGAATTCGAAACGTTTTATACCAAAAATATATTGCTTAATGAAGGAAT 26779 Query 167946 TCGAGCATGGTTAGCACCTAT---CGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGA 168002 || || || | | |||| || ||||||||||| || || | ||||||||||| Sbjct 26778 CCGTGCTTGAATGG---CTATGCAGGACCAACCTCATGAAAATTTCATTTTCCCAGAGGA 26722 Query 168003 AGTTCTCCCACGAGGCAACGCACTATAA 168030 |||| | || || || || || || ||| Sbjct 26721 AGTTTTACCTCGCGGAAATGCTCTCTAA 26694 >seq4610 Length=4342 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 18009 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAG 18067 ||||||||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 2147 GGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGAC 2206 Query 18068 TCCGCTATTCTCCA 18081 |||| ||||||||| Sbjct 2207 TCCGATATTCTCCA 2220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560218881636000