Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_020860.1 Length=44557 Score E Sequences producing significant alignments: (Bits) Value seq41982 150 5e-32 >seq41982 Length=52664 Score = 150 bits (166), Expect = 5e-32 Identities = 347/519 (67%), Gaps = 8/519 (2%) Strand=Plus/Minus Query 13246 AGAATAAAATCATTTTTAGTATTAGGTGATAGTGGCGGAGGCTCCTCTATGGCTGTTGAA 13305 ||||||| |||| | || || | | || ||| ||||| || || | |||||||| Sbjct 36348 AGAATAATTGCATTCATTGTTTTGGCTAATTCTGGGGGAGGATCTTCAACCGCTGTTGAG 36289 Query 13306 ATAATGACTGATACTATTGCTGAAATAAGaaaaactaaaaaaGTTTACGGTCTTGTTAAG 13365 || ||| ||| |||| || || | ||||||| | || || || || | || Sbjct 36288 ATTATGGTAGATGCTATATTGGAGGTACGTAAAACTAGGGAGGTATATGGACTAATAAAA 36229 Query 13366 AAAGGCGGAATGATGGCTTCTGCTTGTTTTGGCATCATGTCAGCTTGTAAAGATGGTTTA 13425 ||||| || | || || || |||| ||| || || | |||||||| || || Sbjct 36228 AAAGGAGGTCTAGCTGCATCCGCCTGTTATGGAATACTGACTGCTTGTAA---TGCAATA 36172 Query 13426 TGGGCTGAAAGCGAAATGAGTATAGTTGGTTCCGCTGGAACAATGATACAATTTGATGGA 13485 | | ||| | ||||| || || || || || || || ||||| |||||||| ||| Sbjct 36171 TATTCCGAATCCAAAATGTCGATTGTCGGGTCTGCAGGGACTATGATGCAATTTGAAGGA 36112 Query 13486 AGAGCAGCTAATACTGAAGAGAAAGGTGTTAAACA---TATTAGGATATATGCTCCGGAG 13542 | | ||| || || |||| |||| | ||| | ||| | |||||||||| | | Sbjct 36111 CGTGAAGCCAACACAAAAGATAAAGACGGGAAAAAATATATCCGCCTATATGCTCCCGCG 36052 Query 13543 TCTGATCATAAAAATCACGGTTTCGAAGAAGCTTTAAATAAAGACAACTATGCAGTCT-T 13601 | ||||| |||| ||||| || ||||| | || || |||||||||| ||| | | Sbjct 36051 GCAACACATAAGAATCTCGGTTATGAGGAAGCCCTTAACAATGACAACTATG-AGTTTCT 35993 Query 13602 AACCGATGAGCTATTAAAGCCTATGAATGATAGGTTCTTATCTTTAATCGAATCTAATAG 13661 || ||| || || ||||| || || ||| | | || ||||| | || ||| ||||| Sbjct 35992 AATCGACGAACTCTTAAAACCCATAAATCAAAACTTTTTATCCCTCATTATATCCAATAG 35933 Query 13662 ACCGCAACTTAAGGGAACGGACTTTAGAAACGGGCATACGGTTTTCGCTAAAGATGCTAT 13721 ||||||||| | | | | || || |||||||| ||||| || || ||||| Sbjct 35932 ACCGCAACTGCAAGACTCCAAGTTCGATAATGGGCATACTGTTTTTGCGGGCGAGGCTAT 35873 Query 13722 TGGTACTTTTATTGACGGTATTAAATCGTTCGCTGAAGT 13760 ||| || ||||| || || |||||||||||| ||||| Sbjct 35872 TGGAACATTTATAGATGGAATTAAATCGTTCAAGGAAGT 35834 Score = 96.9 bits (106), Expect = 1e-15 Identities = 250/381 (66%), Gaps = 0/381 (0%) Strand=Plus/Minus Query 17998 GCTTTATTCGGAAGTACTTTAGCTGACAAAGATGATTTAGCTCTTATAACTGATGATTCT 18057 || || ||||| ||| || | |||||| |||||| | | || || |||| || Sbjct 30992 GCATTGTTCGGTAGTGTGTTGGATGACAAGGATGATATCATTGCCATTACGGATGTAGCT 30933 Query 18058 GACAGAGTTGAACAAATAACCAATGTTTTATGCCCAGCACCTAATTCAAAAGGATTTAGT 18117 | | || || || |||| || || | || ||||| || || || | |||||| | Sbjct 30932 GCCCGAAGGGACCAGGTAACAAACGTACTTTGTCCAGCGCCAAAATCCGATGGATTTCCT 30873 Query 18118 GGCGAAGCTGCTGCTAACGTGTGTGCTTTATTGTCTAGAGTAGCTCAAGACAATCCTGAA 18177 | ||||| || || |||| | | || | ||| | ||||||||||| ||| Sbjct 30872 TGGGAAGCCGCAGCGAACGCCGCGACGATCTTTGCAAGAAAAATGCAAGACAATCCGGAA 30813 Query 18178 CTTGATGTATCAGATAAATACTATACTGATATGCCAACTCCTGATAGCGGTGTGATTGGA 18237 | |||||| || | |||| | |||||||| || | ||| ||||| Sbjct 30812 TTGGATGTAAACAATGAGGTCTATCCCGATATGCCTGTCCCATCAAATGGTCAAATTGGT 30753 Query 18238 GATATGTCAGATTACAACAATAGAGATTTCTTAGTTAAGAAAGGTTGTTCTACTGTCATA 18297 || ||| | |||||| | ||||| ||||| || || || ||||| |||||| || || Sbjct 30752 GACATGGCCGATTACGAGAATAGGGATTTGTTGGTGAAAAAAGGGGCTTCTACCGTACTA 30693 Query 18298 CTTGAAAATGGTGCTTACAATCTACAGGATTTAGTCACTACATATCACCCTGAAGGTGAG 18357 || |||||||| |||| |||||||||| || || || ||||| |||||| || Sbjct 30692 CTAAAAAATGGTAAGTACACCATACAGGATTTTGTTACCACTTATCATATTGAAGGGGAA 30633 Query 18358 AAGCCGCTACAATATTCTTAT 18378 | ||| | |||||| | ||| Sbjct 30632 ACCCCGTTGCAATATGCCTAT 30612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142212641299820