Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq135647 176 6e-39 seq9473 123 3e-23 seq122735 113 6e-20 seq6425 98.7 1e-15 seq83140 96.9 5e-15 seq52741 95.1 2e-14 seq10895 93.3 6e-14 seq57105 87.8 2e-12 seq44056 87.8 2e-12 seq8271 84.2 3e-11 >seq135647 Length=5675 Score = 176 bits (194), Expect = 6e-39 Identities = 390/578 (67%), Gaps = 19/578 (3%) Strand=Plus/Plus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAAT-CTTTCAT 195690 || || || || || | |||||||||| ||||||||||||| ||| || || || | Sbjct 5070 CCTGAGGAGATCTCCGCCATGGTGTTGACCAAGATGAAGGAGATTGCCGATGACTATC-T 5128 Query 195691 GGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACG 195750 || | | || || | ||||| || ||||| ||||| ||||||| || || || | Sbjct 5129 CGGCAGGAAGGTCAAGAACGCAGTCGTCACTGTGCCTGCCTACTTCAACGACTCCCAGAG 5188 Query 195751 ACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGA 195810 |||||| || |||||||||| || || || ||||| ||| | ||||| ||||| || Sbjct 5189 ACAGGCCACCAAGGACGCTGGGGCCATCGCTGGTCTCAACGTGATGAGAATCATCAACGA 5248 Query 195811 ACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGAC--GAAGATAAAAAT 195868 || || || || || || || || ||||| |||||||| |||| | || | || Sbjct 5249 GCCCACTGCTGCCGCCATCGCCTACGGTCTCGACAAGAAG--GGACAGGGTGAGAGGAAC 5306 Query 195869 GTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGT 195928 || | || || ||||||||||| || || || ||||| || || || | || || | Sbjct 5307 GTTCTCATTTTCGATCTCGGTGGAGGCACTTTCGATGTGTCTCTCCTGACGATCGAGGAC 5366 Query 195929 GGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGAT 195988 || || || ||||| ||||| || || ||||| || ||| | ||||| || |||||||| Sbjct 5367 GGGATCTTTGAAGTCAAGGCCACCGCCGGTGACACCCATTTGGGTGGAGAGGATTTCGAC 5426 Query 195989 GCACGTCTTCTCCGTCATTTGTCTG-----ATGAGTTCCGTCGAAAGAATAAG---AAAG 196040 || ||| || ||| |||| | || ||| | ||||| | | || | Sbjct 5427 AACCGCCTTGTC---GATT--TCTGCATCCAGGACTTCAAGAGGAAGAACAGGGGCAAGG 5481 Query 196041 ATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAAC 196100 | | || || || || || ||||| || || |||| || || |||||||| | Sbjct 5482 ACCTCTCGGGCAACAACAGAGCCCTTCGCCGTCTCCGGACCCAGTGCGAGCGTGCCAAGC 5541 Query 196101 GAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTG 196160 | |||| || ||| | || || | | | |||||||| || | || || || |||| Sbjct 5542 GCTCTCTGTCCTCTTCTGCCCAGGCCACCATCGAGATTGACTCCCTCTTCGATGGCATTG 5601 Query 196161 ACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAG 196198 ||| || ||||| ||||||| ||||| || ||| Sbjct 5602 ACTACTCCGTCACTATCTCCCGTGCTCGTTTCGAGGAG 5639 Score = 111 bits (122), Expect = 2e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || || ||| | |||||||| ||||| ||||| ||||| ||| | || || | Sbjct 4428 GCGATCGGAATTGATCTTGGAACTACCTACTCCTGTGTCGGTGTCTGGAAGAACGACACT 4487 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| || | || ||||| ||||||||||| ||||| || || || ||||| || Sbjct 4488 GTGGAGATCATTGCTAACGACCAGGGAAACCGTACCACTCCCTCCTATGTGGCCTTCACT 4547 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | ||| ||||| | ||||| || || || || ||| || | || || || Sbjct 4548 GACACTGAGCGTCTGATCGGAGACGCTGCGAAGAACCAGGTGGCCAGAAATCCCGAAAAC 4607 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGA 195522 || ||||| || |||||| | || || || ||| | || || || Sbjct 4608 ACCGTCTTCGATGCGAAGAGACTCATCGGACGCCACTTCTCTGA 4651 >seq9473 Length=1265 Score = 123 bits (136), Expect = 3e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| || || || ||||| || ||||| ||||| || ||| | || Sbjct 1098 ATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACGATCACTCTCGATGTGGAGCCCTCT 1157 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | ||||| ||| |||| || ||||| || || ||||| || ||||| ||||||||| Sbjct 1158 GACTCTATCGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGGATTCCCCCCGATCAG 1217 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTC 172029 || || || || || || || || ||||| || || || || || ||| Sbjct 1218 CAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACTCTC 1265 >seq122735 Length=1630 Score = 113 bits (124), Expect = 6e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 171889 GGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAG 171948 || ||||| |||| || ||||| ||| |||||| | |||| || | || || ||| Sbjct 215 GGCAAAACCGTCACTCTTGAGGTGCGGTCCTCAGACTCTGTCGAGAAGTTGAAGGCAAAG 274 Query 171949 ATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAG 172008 ||| | | ||||| || || ||||| ||| |||| || | |||||||| || || ||| Sbjct 275 ATTAAGGCAAAGGAGGGGATCCCACCAGATGAGCAGCGTTTGATTTTTGCAGGAAAGCAG 334 Query 172009 CTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTT 172068 || || || ||| |||| ||| | || ||||||||||| | ||||| ||||| |||||| Sbjct 335 CTCGAGGACGGATGTACGCTCTCCGACTACAACGTTCAGGATGAGTCCACTCTTCACCTT 394 >seq6425 Length=3916 Score = 98.7 bits (108), Expect = 1e-15 Identities = 240/358 (67%), Gaps = 12/358 (3%) Strand=Plus/Plus Query 195649 TATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGA 195708 |||||| | | ||||||||||||| || || | | || |||| || || | Sbjct 1899 TATGGTCCTCACCAAGATGAAGGAGATCGCTGACGACTACCCCGGCAAAAAGGTCAAGAA 1958 Query 195709 TGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGC 195768 ||||| |||||||| ||| | ||||||| || || || ||||||| |||||||| Sbjct 1959 CGCAGTCGTGACTGTCCCTACCTACTTCAACGACTCCCAGAGACAGGCCCTCAAGGACGC 2018 Query 195769 TGCTGCTATTGCGGGTCTAAACTGTC-TTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 || || || || || || ||| ||| | ||||| ||||| | || || || || || | Sbjct 2019 TGGGGCCATCGCTGGCCTCAAC-GTCATGAGAATCATCAACGGGCCCACTGCAGCAGCTA 2077 Query 195828 TTGCTTATGGTCTGGACAAGAACAAGG---ACGAAGATAAAAATGTATTGATCTTTGATC 195884 |||| || || || | | ||||||| | | || | || || |||||||||| | Sbjct 2078 TTGCGTACGGGCTTG---ATAACAAGGGTCAGGGTGAGAGGAACGTTCTGATCTTTGACC 2134 Query 195885 TCGGTGGTGGTACGTTTGATGTCTCACTTCT--CAATATTGAAGGTGGTATATTCGAAGT 195942 |||| | || || | ||||| || || || | || | | || | || || | | Sbjct 2135 TCGGAGCAGGCACTCTCGATGTGTCTCTCCTGACCATCTCGGAG--GACATCTTTAACAT 2192 Query 195943 AAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTC 196000 ||||| || ||||| || |||| | ||||| || |||||||| |||||| || Sbjct 2193 GAAGGCCACAGCTGGAGACCCTCACTTGGGTGGAGAGGATTTCGACAACCGTCTTGTC 2250 >seq83140 Length=1468 Score = 96.9 bits (106), Expect = 5e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 78644 GAGACCGGCACCCCGTATATGCTATACAAAGACAGCTGTAACAGAAAGTCTAACCAAAAG 78703 |||||||| ||||| || ||||| ||||||||| || ||||||||||| |||||| || Sbjct 1101 GAGACCGGTACCCCCTACATGCTGTACAAAGACGCGTGCAACAGAAAGTCCAACCAACAG 1042 Query 78704 AACCTAGGTGTCATCAAAAGCTCTAACCTTTGCACAGAAATTCTGGAATACAC 78756 ||||| || |||||| || ||||| ||||| |||||| | || ||||| Sbjct 1041 AACCTGGGGTGCATCAAGTCATCCAACCTCTGCACTGAAATTGTCGAGTACAC 989 >seq52741 Length=4446 Score = 95.1 bits (104), Expect = 2e-14 Identities = 242/357 (68%), Gaps = 11/357 (3%) Strand=Plus/Minus Query 195630 CTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCA 195689 ||||| |||| |||| | ||||| | |||||||| |||| ||||| || Sbjct 1811 CTCCCCAAGAGCTTTCTGCAATGGTCCTTCAAAAGATGAAAAAGACCGCGGAGGATTATT 1752 Query 195690 TGGGTAAA-AC-TGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACA 195747 |||| | || | | |||| || ||| | || ||||| || || || | |||| |||| Sbjct 1751 TGGGACAGGACGTTTCAAAG--GCCGTTATTACGGTACCGGCCTATTTTAATGATGCACA 1694 Query 195748 ACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTA-GAATTATCA 195806 ||| || || || ||||| || | | ||||| || || | | || | | ||||||| Sbjct 1693 ACGCCAAGCAACCAAGGAGGCAGGGGAAATTGCTGGACTTACC-GTAGAACGTATTATCA 1635 Query 195807 ATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAA 195866 ||||||| || || || | | |||||||| ||||| || || | || ||| ||| Sbjct 1634 ATGAACCGACTGCAGCATCCTTGGCTTATGGGCTGGATAA-AAAACATAC--CGATCAAA 1578 Query 195867 ATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATT-GAA 195925 | ||| || ||||||| | || || |||||| ||| || || | ||| ||| | Sbjct 1577 AGGTAGTGGTCTTTGACTTTGGAGGAGGTACGCATGACGTTTC-CATCTTGGAATTGGGC 1519 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGAT 195982 | |||| |||| || ||| ||| || | ||| || || ||| | |||||||| ||| Sbjct 1518 GATGGTGTATTTGAGGTATTGGCCACGGATGGGGACACCCATTTGGGTGGTGATGAT 1462 Score = 84.2 bits (92), Expect = 3e-11 Identities = 211/318 (66%), Gaps = 2/318 (1%) Strand=Plus/Minus Query 196452 AAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTG 196511 ||||| | || || | |||||| | || |||||||||| |||| || ||| ||| Sbjct 995 AAGATGTGTTGTTATTGGATGTTACTCCGTTATCCCTGGGCATTGAGACTATGGGAAGTG 936 Query 196512 TTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTT 196571 | ||||| ||| | || ||| ||| || || ||||| || || || ||| | || | Sbjct 935 TAATGACCAAATTAATCGATGCGAATACTACCATTCCTACCAAAAAATCACAGATATTCT 876 Query 196572 CAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCC 196631 | || | ||||||||||| ||| | ||||| ||| |||||||||| || Sbjct 875 CCACTGCGGCGGATAATCAACCCTCTGTGGAGATTCACGTACTGCAAGGAGAACGGCCCA 816 Query 196632 GTGCAAAGGATAACCA-TCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCC 196690 ||| ||||||| | ||| | || ||| |||| || ||||| | |||||| Sbjct 815 TGGCAGGGGATAACAAGACTA-TAGGGCGTTTTCATTTAGATGGAATTCCTCCCGCACCC 757 Query 196691 AGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTC 196750 || || || || || | ||| ||| ||||| || || ||||| || | || || Sbjct 756 AGGGGAACACCTCAAATAGAGGTTACCTTTGATATCGATGCCAATGGTATCATTAAGGTT 697 Query 196751 ACAGCTGAGGACAAGGCT 196768 ||||| ||| |||||| Sbjct 696 TCAGCTACGGATAAGGCT 679 >seq10895 Length=16309 Score = 93.3 bits (102), Expect = 6e-14 Identities = 283/434 (65%), Gaps = 5/434 (1%) Strand=Plus/Plus Query 78050 CACGCAACACCTACTTTGTTTAATGCAGGTACTCCCCGTCCACAGATGTCATCTTGTTTC 78109 || ||||||||||| | || || | || || ||| || |||||||| || || ||| Sbjct 10600 CATGCAACACCTACCCTCTTCAACTCCGGAACGCCCAAGCCGCAGATGTCCTCCTGCTTC 10659 Query 78110 CTACTTGCAAATAAGGAGGACTCTATTAATGGTATATACGGGACTCTCACAGAGTGTGCT 78169 ||| | || | ||||| ||| ||| ||||||| |||| || | | || || Sbjct 10660 CTATTGGCCATGAAGGACGACAGTATCGATGGTATTTACGACACCTTGAAGCAGACCGCG 10719 Query 78170 CAGATTTCTAAGTGGGCTGGTGGTATAGGTCTTCATATTCACGATGTTCGTGCAAACAAG 78229 | || || | | || || || || || ||| |||||| ||||||| || || | Sbjct 10720 AAAATCTCCCAATCTGCGGGGGGAATCGGACTTTCCATTCACAATGTTCGGGC-TACGGG 10778 Query 78230 TCCAGGATTAG-AGGAACTAATGGTCAGTCTGATGGAATTATTCCTATGCTTAGGGTATT 78288 || ||| || || |||||| || |||| ||| | |||||||| |||||||| Sbjct 10779 ATCATATATAGCCGGTACCAATGGTACTTCCAATGGTATTGTCCCTATGCTAAGGGTATT 10838 Query 78289 CAATGCTACAGCACGCTATGTCAACCAAGCGGGTCGTA---GGAAGGGGTCATTCGCTAT 78345 |||| || |||||||| || | |||| || | | | || || || || || Sbjct 10839 TAATGACACGGCACGCTACGTTGATCAAGGAGGCGGGAAGCGAAAAGGAAGTTTTGCCAT 10898 Query 78346 GTACCTTGAACCTTGGCACGCCGATGTAATGGATTTTTTGGAACTTCGTCTCAACCAGGG 78405 || | || |||||||| || ||| | | || ||||||||| | ||||| || Sbjct 10899 TTATGTAGAGCCTTGGCATGCGGATATTTTTGACTTTTTGGAATTGAAGAAGAACCACGG 10958 Query 78406 TGACGAGGAAGCTCGATGCAGGGATTTATTCACTGCTATGTGGATTCCGGATCTTTTTAT 78465 | || ||| || | | ||| | ||| || ||||||||||| ||| | || || Sbjct 10959 AAAGGAAGAAATGCGTGCCCGTGATCTGTTCTACGCCATGTGGATTCCAGATTTGTTCAT 11018 Query 78466 GAAGAGAGTTGAGG 78479 |||| | || |||| Sbjct 11019 GAAGCGCGTGGAGG 11032 >seq57105 Length=498 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || || || || || || |||||||| || || || ||| | || Sbjct 370 ATGCAGATTTTCGTCAAGACTCTGACCGGGAAGACTATCACTCTTGATGTGGAGCCTTCT 429 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | || || ||| | || ||||||||||| || ||||| || ||||| || |||||| Sbjct 430 GACTCCATTGAGAACGTGAAGGCCAAGATTCAGGACAAGGAGGGAATTCCCCCTGATCAG 489 Query 171982 CAACGACT 171989 || || || Sbjct 490 CAGCGCCT 497 >seq44056 Length=2137 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||||||||| ||||| ||||| || || |||||||| || || || ||||| || ||| Sbjct 312 AAGATTCAAGACAAGGAGGGCATCCCTCCTGATCAGCAGCGCCTGATCTTTGCAGGCAAA 371 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 ||||| | || || | || || | || |||||| | || |||||| ||||| ||| Sbjct 372 CAGCTCCAGGAAGGCAGGACGCTGTCGGACTACAACATCCAGAAGGAGAGCACTCTGCAC 431 Query 172066 CTTGTTCTAAGGCTTCGGGGTGG 172088 | || || || || || || || Sbjct 432 ATCGTCCTCAGACTCCGCGGAGG 454 >seq8271 Length=1924 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 171938 TCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTG 171997 |||| || ||||| || || ||||| || || || ||||||||||| || ||||| |||| Sbjct 1353 TCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCCCCCGATCAGCAGCGCCTTATCTTTG 1294 Query 171998 CTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGG 172051 | || || ||||| || ||||| | || || |||| |||||| | || |||| Sbjct 1293 CGGGCAAGCAGCTCGAGGATGGGAGAACTCTTTCTGACTACAACATCCAGAAGG 1240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656656127056800