Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq13327 327 3e-85 >seq13327 Length=3816 Score = 327 bits (362), Expect = 3e-85 Identities = 608/889 (68%), Gaps = 4/889 (0%) Strand=Plus/Minus Query 41324 TGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCC 41383 ||||| ||| || ||||| | |||||| || || || || |||||||| || || || Sbjct 2735 TGTTTCATTGCTGCTTTTGTAGCCGCACCGCCAGTAGATATTGATGGAATTCGTGAGCCA 2676 Query 41384 GTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGT 41443 || | ||||| || | || || || || || || ||||||||||| || ||||| Sbjct 2675 GTTTCAGGCTCTCTTCTATACGGAAATAATATTATCTCAGGAGCCGTAGTACCGAGTTCA 2616 Query 41444 AATGCCATCGGACTACACTTCTACCCAATTTGGGAAGC--TGCTACACTTGATGAATGGC 41501 ||||| || || | || || || | | || || || || | | |||| ||||| Sbjct 2615 AATGCTATTGGTATGCATTTGTATACGGTGTGAGATGCGATG-TGTA-TTGAGGAATGAT 2558 Query 41502 TGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTT 41561 |||| ||||| || || | |||| || ||| | || ||| | || || || | | Sbjct 2557 TGTATAACGGAGGACCTTACCAATTCGTTGTACTACATTTCTTAATCGGGGTAGCATCAT 2498 Query 41562 ACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTG 41621 | | || || ||||| ||| | || || || |||| ||| | || || || || || | Sbjct 2497 ATCTTGGTCGTGAGTGAGAATTAAGTTACCGTTTAGGAATGCGTCCTTGAATTTTCGTAG 2438 Query 41622 CGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGG 41681 | | |||||| || || || || || | ||||| || || ||||| || | ||||| | Sbjct 2437 CTTTCTCTGCACCAGTTGCAGCAGCATCGGCTGTATTTCTAGTTTACCCAATCGGACAAG 2378 Query 41682 GCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGT 41741 | |||||||| |||| ||||| | || || || || || ||||||| |||||| || | Sbjct 2377 GATCTTTTTCAGATGGAATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGCTAGTAT 2318 Query 41742 TCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTAT 41801 ||||||| ||||| ||||| | ||||| ||||| |||||| || ||||| || |||| Sbjct 2317 TCCAGGCAGAGCATAATATCTTAATGCACCCTTTCCACATGGCTGGAGTGGCAGGAGTAT 2258 Query 41802 TTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTG 41861 |||| || ||| || ||||||||| || | || || || | | ||| | Sbjct 2257 TTGGAGGATCTTTATTTAGTGCTATGCATGGATCTTTAGTTACATCAACTTTAATTTCTA 2198 Query 41862 AGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTT 41921 ||| | |||||| | |||| || ||||| || || || || || || | || || | Sbjct 2197 TGACTAGTGAAGATGAATCACCTAATTATGGGTATAAATTCGGACAGGAATATGAAACAT 2138 Query 41922 ACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTA 41981 | ||||| || || || ||||| || || || || || ||||| |||| || || |||| Sbjct 2137 ATAATATCGTAGCCGCGCACGGATACTTCGGGCGTCTAATCTTTCAATTCGCAAGTTTTA 2078 Query 41982 ATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTG 42041 |||| || ||| | | || ||||| ||||| || || || || || || || || Sbjct 2077 ATAACTCACGTTCTTTACACTTCTTCCTTGCAATTTGACCGGTAGTTGGAATCTGATTAA 2018 Query 42042 CTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTC 42101 | || | || | ||| ||||||||||| | ||||| ||||| || |||||||| Sbjct 2017 CAGCAATGGGAATTAGTACTATGGCTTTCAATCTAAATGGATTCAATTTCAACCAATCAA 1958 Query 42102 TGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACC 42161 | | | ||| || |||| || || | || || || || | || ||||| || | Sbjct 1957 TCATTGATGCAGAAGGACGTGTAATTTCGAGTTGAGCCGATATCTTAAATCGTGCAAATC 1898 Query 42162 TTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGA 42210 | || | || || ||||||||||| ||||| ||||| ||||| || || Sbjct 1897 TAGGAATGGAAGTAATGCATGAGCGTAACGCGCACAATTTCCCTCTAGA 1849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145959702739760