Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq13327 396 8e-106 >seq13327 Length=3816 Score = 396 bits (438), Expect = 8e-106 Identities = 623/890 (70%), Gaps = 4/890 (0%) Strand=Plus/Minus Query 42379 TGTTTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCT 42438 ||||| |||| ||||| | || || || || ||||| |||||||| |||||||| || Sbjct 2735 TGTTTCATTGCTGCTTTTGTAGCCGCACCGCCAGTAGATATTGATGGAATTCGTGAGCCA 2676 Query 42439 GTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGT 42498 || || ||||||||||| || || || || || ||||| || ||||| || || || Sbjct 2675 GTTTCAGGCTCTCTTCTATACGGAAATAATATTATCTCAGGAGCCGTAGTACCGAGTTCA 2616 Query 42499 AACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTC 42558 || || ||||| | ||||||||| || | || || || | |||| ||||| | Sbjct 2615 AATGCTATTGGTATGCATTTGTATACGGTGTGAGATGCGATGTGTATTGAGGAATGATTG 2556 Query 42559 TACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTAC 42618 || || || |||||||| || |||| || | || ||| | ||||| | || || Sbjct 2555 TATAACGGAGGACCTTACCAATTCGTTGTACTACATTTCTTAATCGGGGTAGCATCATAT 2496 Query 42619 TTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCT 42678 | || || || || ||| | ||||| | || ||| | || || || || || ||| Sbjct 2495 CTTGGTCGTGAGTGAGAATTAAGTTACCGTTTAGGAATGCGTCCTTGAATTTTCGTAGCT 2436 Query 42679 TACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGT 42738 | |||||| || || || ||||| | || || || || || || ||| | || ||||| Sbjct 2435 TTCTCTGCACCAGTTGCAGCAGCATCGGCTGTATTTCTAGTTTACCCAATCGGACAAGGA 2376 Query 42739 TCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTC 42798 ||||||||||||||||||||||| || ||||| || || |||||||||||| | || ||| Sbjct 2375 TCTTTTTCAGATGGAATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGCTAGTATTC 2316 Query 42799 CAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTT 42858 ||||| || ||||| || | ||||| |||||||| ||| ||| || || || |||||| Sbjct 2315 CAGGCAGAGCATAATATCTTAATGCACCCTTTCCACATGGCTGGAGTGGCAGGAGTATTT 2256 Query 42859 GGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAA 42918 || || || || || ||||||||||| | | || || || || | | | Sbjct 2255 GGAGGATCTTTATTTAGTGCTATGCATGGATCTTTAGTTACATCAACTTTAATTTCTATG 2196 Query 42919 ACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTAT 42978 || | |||| | ||| | |||||||| || || ||||| || || | || || ||| Sbjct 2195 ACTAGTGAAGATGAATCACCTAATTATGGGTATAAATTCGGACAGGAATATGAAACATAT 2136 Query 42979 AACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAAT 43038 || || || || ||||| || ||||| || || || ||||| |||| || |||||| Sbjct 2135 AATATCGTAGCCGCGCACGGATACTTCGGGCGTCTAATCTTTCAATTCGCAAGTTTTAAT 2076 Query 43039 AATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACT 43098 || || ||||| |||||||| ||||| ||| || || || || || || || || Sbjct 2075 AACTCACGTTCTTTACACTTCTTCCTTGCAATTTGACCGGTAGTTGGAATCTGATTAACA 2016 Query 43099 TCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTT 43158 | | || | ||||||||||| || || | ||||| || || || ||||||||| | Sbjct 2015 GCAATGGGAATTAGTACTATGGCTTTCAATCTAAATGGATTCAATTTCAACCAATCAATC 1956 Query 43159 GTTGATAATCAGAA--TCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACC 43216 ||||| ||||| | ||| || | | ||| || ||||| || |||||||| || | Sbjct 1955 ATTGAT--GCAGAAGGACGTGTAATTTCGAGTTGAGCCGATATCTTAAATCGTGCAAATC 1898 Query 43217 TTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGAT 43266 | || | || || ||||| ||||| || || || || ||||| || ||| Sbjct 1897 TAGGAATGGAAGTAATGCATGAGCGTAACGCGCACAATTTCCCTCTAGAT 1848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143282773936120