Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq10665 205 3e-48 seq1671 174 5e-39 seq52713 98.7 3e-16 >seq10665 Length=3382 Score = 205 bits (226), Expect = 3e-48 Identities = 240/317 (76%), Gaps = 18/317 (6%) Strand=Plus/Plus Query 40707 CCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTC-CGGGTGACGTACTGGAT 40765 ||| |||| |||||| |||||| ||| |||||||||| | || ||||||||||| Sbjct 2273 CCGAACGTAATGATCTGAGCGACCCGGTCCCGCCCGTACTTCTCCTGT-ACGTACTGGAT 2331 Query 40766 CACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGC 40823 ||| ||| | || || || | || |||||||||||||| || ||||| || |||||| Sbjct 2332 CACTTCGTCCCGGCGGTCCTGGCA--GAAGTCGATGTCGAAGTCCGGCATCGAGACGCGC 2389 Query 40824 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCG-----AGGTCGG 40878 ||||| || |||||||||||||| | || | |||||||| ||| ||||||| Sbjct 2390 TCGGGATTGAGGAACCGCTCGAACAGCAG-----GTTCCAGCGGATCGGATCGAGGTCGG 2444 Query 40879 TGATCCCGAG-GACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACC 40937 ||||| || ||| ||||||||||||| ||||| | ||||| ||||| ||||||||| Sbjct 2445 TGATCTTCAGCGAC-CAGGCGACCAGCGAGCCGGCGCCCGAGCCGCGCCCGGGGCCGACC 2503 Query 40938 CAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGG 40997 | |||| | ||| ||||| |||||||||||||||||| |||||||| ||| Sbjct 2504 GGTATGCCGCGATTCTTGGCCCACTGGATGAAGTCCGCGACGATCAGGAAGTAGCCGGGG 2563 Query 40998 AAGCCCATCTGGATGAT 41014 || |||||||||| ||| Sbjct 2564 AACCCCATCTGGACGAT 2580 Score = 80.6 bits (88), Expect = 9e-11 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 39847 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39906 ||||||||||||| || || || ||||||||||| || || |||| ||||||| Sbjct 1458 TCTTCTTGCCCATGGCGCGACGCAGCAGGTCGGCGCCGCCCAGACTGTAGCCGGCCAGTT 1517 Query 39907 CCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGA 39966 |||| || | || | || || ||||||||||| |||| | ||||||| | |||||| Sbjct 1518 CCTGGGCGATCTGCATGACCTGTTCCTGGTAGATCATGATCCCGAAGGTCTCGACCAGGA 1577 Query 39967 TC 39968 || Sbjct 1578 TC 1579 >seq1671 Length=6144 Score = 174 bits (192), Expect = 5e-39 Identities = 258/357 (72%), Gaps = 13/357 (4%) Strand=Plus/Plus Query 40642 CGACCTG--GA-AGGGCTTGTCCAGCACGCGGGCTGCGTCCTTCATCGCGTTGCGCGCCT 40698 ||||||| || ||||| | | |||||| ||| | | || || ||| ||||||| Sbjct 4400 CGACCTGCGGATAGGGCATCTGCAGCACCCGGCCGACATCGCGCAGGGCGGCCCGCGCCT 4459 Query 40699 TGATCCGTCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTT--CCGGGTGAC 40756 | |||| | || |||||| ||||| | |||| |||||||| || || || Sbjct 4460 GCAGTTTTCCGAAGGTAATGATCTGGGCGACGTGGTCGCGGCCGTACTTGTCCTGG--AC 4517 Query 40757 GTACTGGATCACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATG 40814 ||| ||||||||||| | || || || | || ||||||||||||| |||||||| Sbjct 4518 GTAGCGGATCACCTCGTCGCGGCGGTCCTGGCAA--AAGTCGATGTCGAAGTCGGGCATC 4575 Query 40815 GACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCG-TGCTCCAGCGGGTCGAG 40873 |||||||||||||| || ||||| |||||||| | || ||| || | || ||||| || Sbjct 4576 GACACGCGCTCGGGATTGAGGAAGCGCTCGAACAACAGGCCGAAGCGCAAG-GGGTCCAG 4634 Query 40874 GTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCC 40933 ||||||||| ||| | ||||||||| ||||||||| | || || ||||| || || Sbjct 4635 GTCGGTGATGGTGAGCGCCCAGGCGACCACCGAACCGGCACCCGAACCACGCCCCGGCCC 4694 Query 40934 GACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTA 40990 |||| || ||| | ||| ||||| |||||||||||| |||| |||||||| Sbjct 4695 GACCGGGATATCGTGCGACTTGGCCCACTTGATGAAGTCCGCAACGATCAGGAAGTA 4751 Score = 98.7 bits (108), Expect = 3e-16 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 39847 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39906 ||||||||||||| || ||||| |||||||||||||| ||||| ||||| |||| | || Sbjct 3653 TCTTCTTGCCCATGGCGCGGCGCAGCAGGTCGGCCTGCCCGAGCGTGTAGTCGGCAAAGA 3712 Query 39907 CCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATGA 39945 |||| || | || | ||| || ||||| |||||||||| Sbjct 3713 CCTGGGCGATCTGCATCACCTGTTCCTGATAGATGATGA 3751 >seq52713 Length=37184 Score = 98.7 bits (108), Expect = 3e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 40718 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACG 40777 |||||| || || | || |||||| || || | ||||||| | || ||| ||| || Sbjct 6293 GATCTGTGCTACTTGGTTGGCCCCATATTTATTGATGACGTAATCCATGACCCGGCCGCG 6352 Query 40778 ACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAA 40837 | | ||||| || || || || | |||||||||||| || || || || || ||||| Sbjct 6353 GCCCTCATCATCAAAATCAATATCAATATCGGGCATGGATACCCGATCCGGATTTAGGAA 6412 Query 40838 CCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGC 40897 |||||| || | || ||| || || ||||| | || || ||| | | ||| || Sbjct 6413 CCGCTCAAAAAGCAGATCGTATTCAAGTGGGTCTATGTTTGTAATCTTTAAGCAGTAAGC 6472 Query 40898 GACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGAC 40936 |||| |||||||| || ||||| || || ||||| || Sbjct 6473 CACCACGGAACCGGCAGCCGAGCCACGGCCGGGGCCCAC 6511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164557649630920