Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq10665 196 2e-45 seq1671 172 2e-38 seq52713 98.7 3e-16 >seq10665 Length=3382 Score = 196 bits (216), Expect = 2e-45 Identities = 238/317 (75%), Gaps = 18/317 (6%) Strand=Plus/Plus Query 40167 CCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTC-CGGGTGACGTACTGGAT 40225 ||| |||| |||||| |||||| ||| |||||||||| | || ||||||||||| Sbjct 2273 CCGAACGTAATGATCTGAGCGACCCGGTCCCGCCCGTACTTCTCCTGT-ACGTACTGGAT 2331 Query 40226 GACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGC 40283 || ||| | || || || | || |||||||||||||| || ||||| || |||||| Sbjct 2332 CACTTCGTCCCGGCGGTCCTGGCA--GAAGTCGATGTCGAAGTCCGGCATCGAGACGCGC 2389 Query 40284 TCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCG-----AGGTCGG 40338 ||||| || ||||| |||||||| | || | |||||||| ||| ||||||| Sbjct 2390 TCGGGATTGAGGAACCGCTCGAACAGCAG-----GTTCCAGCGGATCGGATCGAGGTCGG 2444 Query 40339 TGATCCCGAG-GACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACC 40397 ||||| || ||| ||||||||||||| ||||| | ||||| ||||| ||||||||| Sbjct 2445 TGATCTTCAGCGAC-CAGGCGACCAGCGAGCCGGCGCCCGAGCCGCGCCCGGGGCCGACC 2503 Query 40398 CAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGG 40457 | ||| | ||| ||||| |||||||||||||||||| |||||||| ||| Sbjct 2504 GGTATGCCGCGATTCTTGGCCCACTGGATGAAGTCCGCGACGATCAGGAAGTAGCCGGGG 2563 Query 40458 AACCCCATCTGGATGAT 40474 ||||||||||||| ||| Sbjct 2564 AACCCCATCTGGACGAT 2580 Score = 80.6 bits (88), Expect = 9e-11 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 39307 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGA 39366 ||||||||||||| || || || ||||||||||| ||||| |||| ||||||| Sbjct 1458 TCTTCTTGCCCATGGCGCGACGCAGCAGGTCGGCGCCGCCCAGACTGTAGCCGGCCAGTT 1517 Query 39367 CCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGATCAACTGGAATGTCGGGTCCAGGA 39426 |||| || | || | ||||| ||||||||||| || | | ||| ||| | |||||| Sbjct 1518 CCTGGGCGATCTGCATGACCTGTTCCTGGTAGATCATGATCCCGAAGGTCTCGACCAGGA 1577 Query 39427 TC 39428 || Sbjct 1578 TC 1579 >seq1671 Length=6144 Score = 172 bits (190), Expect = 2e-38 Identities = 209/278 (75%), Gaps = 10/278 (4%) Strand=Plus/Plus Query 40178 GATCTGCGCGACCTTGTCGGCCCCGTACTT--CCGGGTGACGTACTGGATGACCTCGCCA 40235 |||||| ||||| | |||| |||||||| || || ||||| |||| |||||| | Sbjct 4479 GATCTGGGCGACGTGGTCGCGGCCGTACTTGTCCTGG--ACGTAGCGGATCACCTCGTCG 4536 Query 40236 CGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCA 40293 || || || | || ||||||||||||| |||||||| |||||||||||||| || | Sbjct 4537 CGGCGGTCCTGGCAA--AAGTCGATGTCGAAGTCGGGCATCGACACGCGCTCGGGATTGA 4594 Query 40294 GGAAGCGCTCGAAGATGAGCCCG-TGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACG 40352 ||||||||||||| | || ||| || | || ||||| ||||||||||| ||| | Sbjct 4595 GGAAGCGCTCGAACAACAGGCCGAAGCGCAAG-GGGTCCAGGTCGGTGATGGTGAGCGCC 4653 Query 40353 TAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCC 40412 ||||||||| ||||||||| | || || ||||| || |||||| || ||| | | Sbjct 4654 CAGGCGACCACCGAACCGGCACCCGAACCACGCCCCGGCCCGACCGGGATATCGTGCGAC 4713 Query 40413 TTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTA 40450 || ||||| |||||||||||| |||| |||||||| Sbjct 4714 TTGGCCCACTTGATGAAGTCCGCAACGATCAGGAAGTA 4751 Score = 95.1 bits (104), Expect = 4e-15 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 39307 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGA 39366 ||||||||||||| || ||||| |||||||||||||| || || ||||| |||| | || Sbjct 3653 TCTTCTTGCCCATGGCGCGGCGCAGCAGGTCGGCCTGCCCGAGCGTGTAGTCGGCAAAGA 3712 Query 39367 CCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39403 |||| || | || | |||||| ||||| |||||||| Sbjct 3713 CCTGGGCGATCTGCATCACCTGTTCCTGATAGATGAT 3749 >seq52713 Length=37184 Score = 98.7 bits (108), Expect = 3e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 40178 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACG 40237 |||||| || || | || |||||| || || | ||||||| | |||||| ||| || Sbjct 6293 GATCTGTGCTACTTGGTTGGCCCCATATTTATTGATGACGTAATCCATGACCCGGCCGCG 6352 Query 40238 ACGCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAA 40297 | | ||||| || || || || | |||||||||||| || || || || || ||||| Sbjct 6353 GCCCTCATCATCAAAATCAATATCAATATCGGGCATGGATACCCGATCCGGATTTAGGAA 6412 Query 40298 GCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGC 40357 ||||| || | || ||| || || ||||| | || || ||| | | ||| || Sbjct 6413 CCGCTCAAAAAGCAGATCGTATTCAAGTGGGTCTATGTTTGTAATCTTTAAGCAGTAAGC 6472 Query 40358 GACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGAC 40396 |||| |||||||| || ||||| || || ||||| || Sbjct 6473 CACCACGGAACCGGCAGCCGAGCCACGGCCGGGGCCCAC 6511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163040297385420