Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq132084 165 3e-36 seq27829 122 3e-23 >seq132084 Length=12927 Score = 165 bits (182), Expect = 3e-36 Identities = 250/348 (72%), Gaps = 6/348 (2%) Strand=Plus/Plus Query 31459 GTCGAGCATGGTCAGCGTCGCATTG-AAGCCGTTCAACACCACTTCGGTTGTGTAGCGAT 31517 ||| ||||||||||| ||||| | |||| | || |||||| || || || ||||||| Sbjct 9637 GTCCAGCATGGTCAG-GTCGCCGCGGAAGCGCTGCAGCACCACCTCTGTCGTATAGCGAT 9695 Query 31518 CACCACC-GTCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTCGATGTAAACCTTC 31576 | || | | | || ||||||||||||||| |||| || ||||| || | ||| Sbjct 9696 CCTGGCCCGACTG-GTCAGTCCACTTGCGGGTTTGAAGCTGTCCTTCGATATAGATCTTG 9754 Query 31577 GATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGGTGAAGACGACGACG 31636 || ||||| |||||| | |||| || | | ||| |||| |||||| || ||| Sbjct 9755 GAGCCCTTGCGCAGGTACTTCTCGGCCACTTCGGAGAGCTTTTCGTTGAAGATAACCACG 9814 Query 31637 CTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCGCCAGCTTTCGGAA 31696 | |||||||| |||||||| ||| |||||| || || ||||||||| |||| || Sbjct 9815 CGGTGCCACTCAGTGCGCTCGCGGCGCTCGCCGGAGTTACGATCGCGCCAGGTTTCCGAG 9874 Query 31697 GTCGCAAGGCGA-AGGCTGGCGATGCTACCCCCGGCTTGTGTCTTTCGGATTTCCGGATC 31755 ||||| | ||| ||| |||| |||| ||| | || || | |||||||||||||| Sbjct 9875 GTCGCGA-CCGAGAGGTTGGCAATGCGGGTGCCGTCCTGAGTGCTGCGGATTTCCGGATC 9933 Query 31756 GGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGCCAT 31803 | || || | |||| | |||||||||||||||||| || ||||| Sbjct 9934 GCGCCCCAGGTTACCGACCAAAATGACTTTGTTGACGCTCCCCGCCAT 9981 >seq27829 Length=4891 Score = 122 bits (134), Expect = 3e-23 Identities = 245/361 (68%), Gaps = 2/361 (1%) Strand=Plus/Minus Query 31444 GCCACCGCCCTGACTGTCGAGCATGGTCAGCGTCGCATTGA-AGCCGTTCAACACCACTT 31502 ||| ||||| | | |||||||||||||| | || | || ||| | || |||||| | Sbjct 658 GCCGCCGCCACGCCCGTCGAGCATGGTCATC-TCACCACGATAGCGCTGCAGCACCACCT 600 Query 31503 CGGTTGTGTAGCGATCACCACCGTCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCT 31562 |||| | |||||| || |||| || ||| |||||||| || |||| ||||| Sbjct 599 CGGTGGAGTAGCGTTCCTGACCGCTTTGGTCGGTCCATTTGCGGGTCTGGAGCTGGCCCT 540 Query 31563 CGATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGG 31622 ||| ||| | ||| | ||||| |||| || ||||| || | || || | ||| Sbjct 539 CGAGGTAGAGCTTGGCACCCTTCTTCACATACCGCTCGATGACGTCGATCAGCCGCTCGT 480 Query 31623 TGAAGACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGC 31682 |||||||||||| | ||||| ||||| ||| || || ||| | | ||||||| Sbjct 479 CGAAGACGACGACTCGGTGCCATTCGGTCTTCTCGCGCCGTTCTCCGGTCTGACGGTCGC 420 Query 31683 GCCAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGGCTTGTGTCTTTC 31742 ||||| | ||| || || | | ||| | |||| |||| ||| ||| | Sbjct 419 GCCAGTTCTCGCTGGTGGCGACGGAGAGGTTCGCGACCTTACCGCCGTTTTGCAGGGAGC 360 Query 31743 GGATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGCCA 31802 ||| || ||||| || |||| |||| |||||||| |||||||||||||||| || Sbjct 359 GGACCTCGGGATCCCGCCCCAGATTACCGACCAGAATGACCTTGTTGACGCTACCGGACA 300 Query 31803 T 31803 | Sbjct 299 T 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169509009589920