Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq23761 127 2e-23 seq983 122 1e-21 seq23124 114 2e-19 seq83140 96.9 4e-14 seq8712 95.1 1e-13 >seq23761 Length=1799 Score = 127 bits (140), Expect = 2e-23 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| |||||||||||||| ||||| |||||||| |||| | || ||| Sbjct 1533 GAGTGGATGTTCTCCATGGCGATCTGGAATCCGTAGAAGGCCCTGGCCTCAGGCATCTGG 1474 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||||| | ||||| | | ||||||||||| ||||||||||||| || ||||| Sbjct 1473 ACCTCCTGAAGGAACCTGGCCGCCAGGTTCTCCAGCACGATGCCGTCGGAAGCCGCGAAG 1414 Query 869753 AAAGCCAGGACGT 869765 ||||||| |||| Sbjct 1413 AAAGCCAACACGT 1401 >seq983 Length=6241 Score = 122 bits (134), Expect = 1e-21 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 1630087 TCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGACTCGCCGTTGGTGCCCGCCACG 1630146 ||||| ||||| | ||||||||| ||||||||||| ||| |||||||| ||| | | Sbjct 60 TCGTTGAAGACTCTGAGCATGGGGACGAGGCCGTTTGACCTTCCGTTGGTCCCCCTGATG 119 Query 1630147 TAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGACTTGGAG 1630206 || | | | || | | |||||| | || | |||||||| || || ||||||| Sbjct 120 TACGAGTCCTGAGCTCTGATGTTGTGCACCGCCAGTCCGATGCCCCCAGCGTGCTTGGAG 179 Query 1630207 ATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGGCCTTCATGTCC 1630266 || | ||||||||| || || |||||| ||||||||||||||||||| ||| | ||| Sbjct 180 ATCATCGCGCACTGCTTCAGAGTGTCGAAGATGCCCTCGATCGAGTCCTCCTGCCAGTCA 239 Query 1630267 ACGAG 1630271 ||||| Sbjct 240 ACGAG 244 >seq23124 Length=5215 Score = 114 bits (126), Expect = 2e-19 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || || ||| | | |||||||||||||||||||||||||| | || | Sbjct 2288 GCTTGGAGAGCTCTCCGGGGAGCATCAGGCGCACGGCGGTCTGGATCTCTCTGCTGGACA 2347 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||| | |||||| | | ||| | | ||||||| || ||| | |||| | Sbjct 2348 GCGTTCTCTTCTTGTTGAATCGGATCAGTCTGGTGGCCTCGTTGGCGAGTCTATCGAAGA 2407 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| |||||||||||| || ||||| || ||||||| Sbjct 2408 TGTCGTTGATGAAAGAGTTCATGATCGACATCGACTTCTTCGAGATACCAGTCTCGGGGT 2467 Query 1254523 GCACCTGCTTGAGCACCT 1254540 |||||||||| || |||| Sbjct 2468 GCACCTGCTTCAGGACCT 2485 >seq83140 Length=1468 Score = 96.9 bits (106), Expect = 4e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||| || |||||| |||| || || | ||||| || | ||| | || ||||||||| Sbjct 1279 CATGAACAGGTCAGGAATCCAGAGACCGAAGAAGAGATCCCTCGCTCTGTGCTCCTCCTT 1338 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 |||||||||||| | || || |||| | | ||| | |||||| ||||||||||| Sbjct 1339 GCCGTGGTTCTTCCGCAAATCCAGGAAGTCAAGGAGGTCTGAGTGCCAGGGCTCCAGGTA 1398 Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 | ||| |||| ||||||||| ||||| || || Sbjct 1399 GATGGCGAAGGAGCCCTTGCGTTTGCCTCCTCC 1431 >seq8712 Length=2309 Score = 95.1 bits (104), Expect = 1e-13 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 1254366 ATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGC 1254425 ||||| | ||||||||||||||||| | || || || | |||||| | Sbjct 191 ATCAGTCTGACGGCGGTCTGGATCTCTCTGCTGGAGAGAGTTCTCTTCTTGTTGAACCTG 250 Query 1254426 GCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1254485 ||| | | ||||||| || ||| | ||||| |||||||||| || ||||||||| Sbjct 251 ATCAGCCTGGTGGCCTCGTTGGCGAGTCTGTCGAAGATGTCGTTGATGAAAGAGTTCATG 310 Query 1254486 ACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1254540 | ||||||||||| || ||||| || ||||||||||||||||| || |||| Sbjct 311 ATGGACATCGACTTCTTAGAGATACCAGTCTCGGGGTGCACCTGCTTCAGGACCT 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6095101131650730