Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq23124 185 1e-40 seq8712 158 2e-32 seq83140 129 9e-24 seq983 113 7e-19 seq18597 104 4e-16 seq5045 87.8 3e-11 >seq23124 Length=5215 Score = 185 bits (204), Expect = 1e-40 Identities = 183/237 (77%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| |||||||||||||||||| ||| || || ||| | | Sbjct 2249 TGTACTTGGTGACGGCCTTGGTGCCCTCTGAGACGGCGTGCTTGGAGAGCTCTCCGGGGA 2308 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||||||||||||||||||||||| | | || | ||| | |||||| | Sbjct 2309 GCATCAGGCGCACGGCGGTCTGGATCTCTCTGCTGGACAGCGTTCTCTTCTTGTTGAATC 2368 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||| | | ||||||| || ||| | |||| |||||||||| || ||||||| Sbjct 2369 GGATCAGTCTGGTGGCCTCGTTGGCGAGTCTATCGAAGATGTCGTTGATGAAAGAGTTCA 2428 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||||||||| || || ||||| || ||||||||||||||||| || |||| Sbjct 2429 TGATCGACATCGACTTCTTCGAGATACCAGTCTCGGGGTGCACCTGCTTCAGGACCT 2485 >seq8712 Length=2309 Score = 158 bits (174), Expect = 2e-32 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| |||||||| |||||||| ||| || || ||| | | Sbjct 129 TGTACTTGGTGACGGCCTTGGTGCCCTCTGACACGGCGTGTTTGGAGAGCTCTCCGGGGA 188 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| | ||||||||||||||||| | | || || || | |||||| | Sbjct 189 GCATCAGTCTGACGGCGGTCTGGATCTCTCTGCTGGAGAGAGTTCTCTTCTTGTTGAACC 248 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| | | ||||||| || ||| | ||||| |||||||||| || ||||||| Sbjct 249 TGATCAGCCTGGTGGCCTCGTTGGCGAGTCTGTCGAAGATGTCGTTGATGAAAGAGTTCA 308 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 |||| |||||||| || || ||||| || ||||||||||||||||| || |||| Sbjct 309 TGATGGACATCGACTTCTTAGAGATACCAGTCTCGGGGTGCACCTGCTTCAGGACCT 365 >seq83140 Length=1468 Score = 129 bits (142), Expect = 9e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 2071812 CTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTC 2071871 |||| |||||| | | || |||||| ||| | | ||| || | ||| |||||||| Sbjct 1231 CTCGTTCGGGCACATCAACGTCCAGTCTCCGTCCTCCTTCACTCGTCTCATGAACAGGTC 1290 Query 2071872 GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 2071931 |||| || ||| | |||||||| | ||| | || ||||||||||||||||||||| Sbjct 1291 AGGAATCCAGAGACCGAAGAAGAGATCCCTCGCTCTGTGCTCCTCCTTGCCGTGGTTCTT 1350 Query 2071932 TTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 2071991 || || || |||| | |||||| | |||||| |||||||||||| ||| |||| Sbjct 1351 CCGCAAATCCAGGAAGTCAAGGAGGTCTGAGTGCCAGGGCTCCAGGTAGATGGCGAAGGA 1410 Query 2071992 GCCCTTGCGCTTGCCGCCGCC 2072012 ||||||||| ||||| || || Sbjct 1411 GCCCTTGCGTTTGCCTCCTCC 1431 >seq983 Length=6241 Score = 113 bits (124), Expect = 7e-19 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 2073562 TCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGACTCGCCGTTGGTGCCCGCCACG 2073621 ||||| ||||| | ||||||||| || |||||||| ||| |||||||| ||| | | Sbjct 60 TCGTTGAAGACTCTGAGCATGGGGACGAGGCCGTTTGACCTTCCGTTGGTCCCCCTGATG 119 Query 2073622 TAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGCCTTGGAG 2073681 || | | || || | | |||||| | || | |||||||| || || ||||||| Sbjct 120 TACGAGTCCTGAGCTCTGATGTTGTGCACCGCCAGTCCGATGCCCCCAGCGTGCTTGGAG 179 Query 2073682 ATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCGATCGAGTC 2073728 || | |||||||| ||||| || ||| ||||||||||||||||||| Sbjct 180 ATCATCGCGCACTGCTTCAGAGTGTCGAAGATGCCCTCGATCGAGTC 226 >seq18597 Length=4841 Score = 104 bits (114), Expect = 4e-16 Identities = 130/177 (73%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 429632 CACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGA 429691 ||| ||||| || || ||| | ||||| | |||||||||| ||||| ||||||||||| Sbjct 191 CACATTCCGACTGAATCTGTCGGTGACTCCCCCCTACAACGCTGACTTCGACGGCGACGA 132 Query 429692 GATGAACCTGCACGTGCCCCAG---TCGGAGATGGCACGCGCCGAAGTCGCCCACACCAT 429748 ||||||||| ||| | | ||| |||||| || | || ||| |||| |||| ||| Sbjct 131 GATGAACCTTCACCTCGCACAGAGCCCGGAGA---CAAGAGCAGAAATCGCGCACATCAT 75 Query 429749 GGGCGTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGT 429805 ||| ||| || || || || || |||| |||||||||| | || || ||||| Sbjct 74 GGGGGTGCCCAGACAGATGGTCTCCCCTCAGGGCAACAAGCCCGTTATGGGCCTCGT 18 >seq5045 Length=19155 Score = 87.8 bits (96), Expect = 3e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 2233077 GCCGCGGCGAGTTGGTCGCCTTTCCCACCGAGACCGTCTATGGCCTCGGCGCCGACGCGG 2233136 || |||||| | ||||||||||||| |||||||| || |||||||| |||||||| || Sbjct 10809 GCGGCGGCGGGCTGGTCGCCTTTCCGACCGAGACGGTTTATGGCCTTGGCGCCGATGCCA 10750 Query 2233137 CGTCAGACGAGGCCGTACAGCGCATCTTTGACGCCAAGGGCCGACCGTCCAACAACCCGA 2233196 || |||| || || ||||||| | |||||||| ||| ||| | ||| ||| Sbjct 10749 CGGACGACGCAGCGGTGGCCGGCATCTTCGCCGCCAAGGACCGCCCGCGCTTCAATCCGC 10690 Query 2233197 TCATCGTGCAC 2233207 | ||||| ||| Sbjct 10689 TGATCGTTCAC 10679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7900642315646910