Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq52741 107 1e-17 seq633 86.0 5e-11 >seq52741 Length=4446 Score = 107 bits (118), Expect = 1e-17 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 282329 TGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 || |||||||| || ||||| || || | || ||||| |||||||| ||||| | Sbjct 1589 TGTTTTTTATCCAGCCCATAAGCCAAGGATGCTGCAGTCGGTTCATTGATAATACGTTCT 1648 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 || |||| ||||||||| ||||| || || || ||||| | ||||| ||| |||||| Sbjct 1649 ACGGTAAGTCCAGCAATTTCCCCTGCCTCCTTGGTTGCTTGGCGTTGTGCATCATTAAAA 1708 Query 282449 TATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTT 282508 || || || || ||||||||||| | || || || | ||| | |||| | || || Sbjct 1709 TAGGCCGGTACCGTAATAACGGCCTTTGAAACGTCCTGTCCCAAATAATCCTCCGCGGTC 1768 Query 282509 TGTTTCATTTTACTTAAA--ATCATTGATGAAATTTGTTCTGGAGAATAT 282556 | |||||| || || || | ||||| |||| | || |||| |||| Sbjct 1769 TTTTTCATCTT--TTGAAGGACCATTGCAGAAAGCTCTTGGGGAGTATAT 1816 >seq633 Length=12488 Score = 86.0 bits (94), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || ||||| || |||| | |||||||||||||| || || ||||| | | ||| | Sbjct 5602 TTGTCAAGGCCGAACGCCAGCGCAGCAGCAGTTGGCTCGTTGATAATACGGAGAACCTCC 5661 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | ||| |||||| | || ||||| || ||||| ||||| || || ||||| ||||| ||| Sbjct 5662 AAACCGGCAATTTTGCCAGCATCCTTGGTGGCCTGTCTCTGGGAGTCGTTGAAATAAGCA 5721 Query 282455 GG 282456 || Sbjct 5722 GG 5723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3733428540911940