Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chromera_20velia_20[genbank_20GCA_5F000585135.1_202014-03-03] 146,690 sequences; 187,454,854 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq43861 100 2e-16 >seq43861 Length=3806 Score = 100 bits (110), Expect = 2e-16 Identities = 240/357 (67%), Gaps = 16/357 (4%) Strand=Plus/Plus Query 94421 CCTCGATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCCCCA 94480 |||| | |||| |||| |||||| | ||| || | ||| ||| |||| ||| || Sbjct 2604 CCTCCACCTCCTGATCGCTGACGAAGGGGCCGTGGACGCGG---GCGATGCG-GCCGCCG 2659 Query 94481 CCGGC-AGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGG 94539 ||| | | | | | ||| ||||| |||| || || ||| | || |||| ||||| Sbjct 2660 TGGGCCATGTAGAGCATGTCGCCCATGCCCAGCAGGTGTTCGCCGCCCGACTCGCCCAGG 2719 Query 94540 ATCACCCGGCTATCGGTGAGGGACGCTG-TGGC---GAACGACAGCCGCGAGGGCACGTT 94595 ||| ||||| ||| | | ||| || | ||| || | || | || | || Sbjct 2720 ATCGTGCGGCTGTCGATCTTG----CTGGTGACCTGGAAGGAAATGCGGGTCGGGAAATT 2775 Query 94596 GCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATG 94655 | ||||||| || || | || ||||| ||||| ||||| ||||||| || | || Sbjct 2776 GGCCTTGATGGTACCGGTGATGACGTCCACCGAGGGGCGCTGGGTCGCCATGATCAAGTG 2835 Query 94656 AATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTT 94715 ||||||||||| |||||| ||||||||| ||| || ||||| ||||| ||| Sbjct 2836 GATGCCGGCCGCGCGCGCCATCTGCGCGAGGCGCTGGATCGCCGCCTCCACCTC---CTT 2892 Query 94716 GTAGCCACCCATCATGAGGTCCGCGAGTTCATCCACCACTACCACGATGTAGGGGAG 94772 | | | ||| ||| |||||||| | || || || | |||||||||||||| || Sbjct 2893 GCCGGCGACCAGCATCAGGTCCGCCATCTCGTCGACGATCACCACGATGTAGGGCAG 2949 Score = 82.4 bits (90), Expect = 5e-11 Identities = 189/278 (68%), Gaps = 10/278 (4%) Strand=Plus/Plus Query 94788 GTGGCGCACGCC-AGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCTCT---ACGGTGA 94843 || ||||||||| |||| || ||| |||||| || || ||||| || |||| Sbjct 3082 GTTGCGCACGCCGAGCCGGCT-CATGGCCCGGTAGCGCTCCTCCATTTCGCGCACGGC-- 3138 Query 94844 GCCACCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGG 94903 |||| |||| ||| |||| | | ||| || ||||| || ||| || |||| Sbjct 3139 -CCACTTGAGCGCGACCACGGCCTTCTTCGGCTCGGTCACCACCGGACTGAGCAGATGGG 3197 Query 94904 GGATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACC 94962 | || || | ||| | | || || | ||| || || |||| |||||||| | | Sbjct 3198 GAATCCCATCGTAGACGCTCAGTTCCAG-CATCTTCGGATCGACCATGATGAAGCGGCAC 3256 Query 94963 CGATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTG 95022 | || || |||||| ||||||||||| | ||| | ||||| | || |||||| Sbjct 3257 CTGTCCGGCCCGTGCCGGTACAGCAGCGAAACGATCATGGCGTTGACGGAGACCGACTTG 3316 Query 95023 CCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCAT 95060 ||||| ||||||| || ||||| ||||| |||||||| Sbjct 3317 CCCGAACCGGTCGTACCGGCCACAAGCAGGTGCGGCAT 3354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339513535917920